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Marker Overview
| Name | BNL1646 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL1646_orig
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| Source Type | genomic |
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| Repeat Motif | (AG)20 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL1646_F: TTAAAGGGCAACAAAAGTTCAA |
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| Primer 2 | BNL1646_R: CATGTGATGTAACCTCTCTCTCTCTC |
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| Polymorphism | P_ BNL1646 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch08_At.08 | N/A | 157.8 | BNL1646a | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 138.1 | BNL1646a | View |
| 3 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch08_At.08 | N/A | 99.5 | BNL1646a | View |
| 4 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch24_Dt.08 | N/A | 31.2 | BNL1646b | View |
| 5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch08_At.08 | N/A | 214.3 | BNL1646b | View |
| 6 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch24_Dt.08 | N/A | 68.7 | BNL1646b | View |
| 7 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 101.65 | BNL1646 | View |
| 8 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch08_At.08 | N/A | 160.11 | BNL1646 | View |
| 9 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 212 | BNL1646 | View |
| 10 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch08_At.08 | N/A | 0 | BNL1646 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 38 | BNL1646 | View |
| 12 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch08_At.08 | N/A | 96 | BNL1646 | View |
| 13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch24_Dt.08 | N/A | 2.9 | BNL1646-195 | View |
| 14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch24_Dt.08 | N/A | 113.55 | BNL1646-195 | View |
| 15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch24_Dt.08 | N/A | 53.5 | BNL1646-195 | View |
| 16 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch08_At.08 | N/A | 0 | BNL1646-180 | View |
| 17 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch08_At.08 | N/A | 97.3 | BNL1646 | View |
Sequence
>BNL1646 ID=BNL1646; Name=BNL1646; organism=Gossypium hirsutum; type=genetic_marker; length=203bp
TTAAAGGGCAACAAAAGTTCAAACAAAATGAAGTCCATGGGGTTCAAACA
AGAAAAGAAGTATGTCTATGGAAACTGAGAACATTGAGAGACCATAAAAT
TACAATACCAGAGCTAAAAGTGTCAATAAGTGTGTGTGTGTGTGTGTGTG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTTACATCAC
ATG
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