BNL1606, BNL1606 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1606
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1606_orig
Source Typegenomic
Repeat Motif(AG)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL1606_F: CATGTAGGATGAGAGAGAGAGAGAGA
Primer 2BNL1606_R: GGGGCTTTACGACATACCTG
PolymorphismP_ BNL1606
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:4977686..4977862 +
D03chromosomeD03:47633303..47633495 -
CM018204.1chromosomeCM018204.1:4969642..4969818 +
CM018217.1chromosomeCM018217.1:47946386..47946574 -
KI_2_4chromosomeKI_2_4:37658181..37658355 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:107906382..107906558 +
D10_02chromosomeD10_02:46010603..46010811 -
CM016615.1chromosomeCM016615.1:106328519..106328697 -
scaffold154.1supercontigscaffold154.1:216442..216634 -
At_chr5chromosomeAt_chr5:4066082..4066258 -
A03chromosomeA03:3969933..3970109 +
D03chromosomeD03:41488231..41488423 -
Ghir_A03chromosomeGhir_A03:5749432..5749608 +
Ghir_D03chromosomeGhir_D03:47450185..47450377 -
A03chromosomeA03:5379308..5379484 +
D03chromosomeD03:48850889..48851081 -
A03chromosomeA03:5699482..5699656 +
D03chromosomeD03:48428565..48428757 -
A03chromosomeA03:5099127..5099303 +
D03chromosomeD03:47708965..47709151 -
scaffold43724supercontigscaffold43724:387..575 -
Gbar_A03chromosomeGbar_A03:4825523..4825699 +
Gbar_D03chromosomeGbar_D03:46343140..46343326 -
A03chromosomeA03:5109038..5109214 +
D03chromosomeD03:48757059..48757247 -
CM017612.1chromosomeCM017612.1:5334810..5334986 +
CM017625.1chromosomeCM017625.1:47158539..47158729 -
CM017638.1chromosomeCM017638.1:5658691..5658867 +
CM017651.1chromosomeCM017651.1:51278536..51278768 -
CM017690.1chromosomeCM017690.1:5293404..5293580 +
CM017703.1chromosomeCM017703.1:48743821..48744015 -
A03chromosomeA03:5793389..5793565 +
D03chromosomeD03:49682821..49683013 -
Chr01chromosomeChr01:113364369..113364545 -
Chr02chromosomeChr02:43707984..43708172 -
B_04chromosomeB_04:5582418..5582594 +
Chr03chromosomeChr03:45280374..45280568 -
chr03chromosomechr03:30450638..30450826 -
Chr_03chromosomeChr_03:25903869..25904144 -
Chr03chromosomeChr03:26298833..26299147 -
Chr03chromosomeChr03:28260505..28260691 -
E02chromosomeE02:81547877..81548067 -
F02chromosomeF02:71566844..71567022 -
Chr02chromosomeChr02:7338873..7339051 +
Chr03chromosomeBNL1606:1..365 .
Chr03:41094940..41095300 -
scaffold323supercontigBNL1606:1..365 .
scaffold323:537156..537518 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1606_origBNL1606_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A52.67BNL1606View
2AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A34BNL1606View
3TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A95.71BNL1606View
4TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A78.9BNL1606View
5W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A176.6BNL1606View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch17_Dt.03N/A11.6BNL1606View
7TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A91.8BNL1606-180View
8TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A51.76BNL1606-180View
9TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A90.1BNL1606-180View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch17_Dt.03N/A67.89BNL1606View
11TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A78.89BNL1606View
12PD 94042 x (AD)4-08, F2 (2016)AD_ch17_Dt.03N/A36.7BNL1606View
Sequence
>BNL1606 ID=BNL1606; Name=BNL1606; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
CATGTAGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGAGTT
AGAAAGTAACCGGTAGATGCCAAAAGTGGAAGCAGAACAGAGCAAGCAGC
AAGGACAGATGTTATACCAGCTGCAGTGCCTTCAATAGTTTTCTCTGAAG
AGTAAGAAATTTGCTAGAATTAGCAGGTATGTCGTAAAGCCCC