BNL1605, BNL1605 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1605
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1605_orig
Source Typegenomic
Repeat Motif(AG)25
PCR ConditionAnnealing temperature: 55
Primer 1BNL1605_F: TTGGGGAGAATGAAGGAGAG
Primer 2BNL1605_R: TATCTACTGCCAGCGCTCCT
PolymorphismP_ BNL1605
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:8402382..8402481 -
CM018213.1chromosomeCM018213.1:10614030..10614123 -
D10_12chromosomeD10_12:6147059..6147170 -
Ghir_D12chromosomeGhir_D12:8401747..8401844 -
Ghir_A12chromosomeGhir_A12:10892022..10892107 -
D12chromosomeD12:8407114..8407214 -
D12chromosomeD12:8348248..8348349 -
Dt12chromosomeDt12:9018374..9018457 -
scaffold22333supercontigscaffold22333:118397..118480 -
Gbar_D12chromosomeGbar_D12:8145123..8145206 -
Gbar_A12chromosomeGbar_A12:10894715..10894808 -
CM017634.1chromosomeCM017634.1:8268521..8268612 -
CM017647.1chromosomeCM017647.1:11139936..11140033 -
CM017699.1chromosomeCM017699.1:10532757..10532848 -
D12chromosomeD12:8575727..8575826 -
Chr08chromosomeChr08:8422061..8422172 -
Chr08chromosomeBNL1605:1..209 .
Chr08:8036974..8037146 -
Chr5chromosomeBNL1605:1..209 .
Chr5:22787909..22788081 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1605_origBNL1605_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A81BNL1605bView
2Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A81BNL1605aView
3Xinluzao-1 x Hai-7124, F2 (2008)AD_ch12_At.12N/A32.6BNL1605View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A129.3BNL1605View
5Yumian-1 x T586, RIL (2015)AD_ch12_At.12N/A45.4BNL1605View
6Yumian-1 x 7235, RIL (2015)AD_ch12_At.12N/A87.9BNL1605View
70-153 x sGK9708, RIL (2016)AD_ch26_Dt.12N/A8.9BNL1605View
80-153 x sGK9708, RIL (2017)AD_ch12_At.12N/A33.78BNL1605View
Sequence
>BNL1605 ID=BNL1605; Name=BNL1605; organism=Gossypium hirsutum; type=genetic_marker; length=100bp
TTGGGGAGAATGAAGGAGAGTAAGTGAACAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGCGCTGGCAGTAGATA