BNL1597, BNL1597 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1597
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1597_orig
Source Typegenomic
Repeat Motif(GA)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL1597_F: GGGCTTTCCGATACTGAACA
Primer 2BNL1597_R: CCTGCAATAAGGCGTTCAAT
PolymorphismP_ BNL1597
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:9087371..9087591 +
A07chromosomeA07:9942463..9942673 +
CM018221.1chromosomeCM018221.1:8629617..8629836 +
CM018208.1chromosomeCM018208.1:10152910..10153127 +
D5_07chromosomeD5_07:8552576..8552791 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:10236271..10236492 +
D10_07chromosomeD10_07:45390659..45390879 -
scaffold957.1supercontigscaffold957.1:328834..329044 +
Dt_chr1chromosomeDt_chr1:38745343..38745553 -
scaffold65522supercontigscaffold65522:459..679 +
D07chromosomeD07:8693516..8693736 +
A07chromosomeA07:9280144..9280354 +
Ghir_D07chromosomeGhir_D07:8939273..8939493 +
Ghir_A07chromosomeGhir_A07:10247682..10247891 +
D07chromosomeD07:8579369..8579589 +
A07chromosomeA07:9715327..9715537 +
D07chromosomeD07:8866660..8866870 +
A07chromosomeA07:10213129..10213339 +
D07chromosomeD07:8765878..8766098 +
A07chromosomeA07:10284417..10284627 +
scaffold24071supercontigscaffold24071:94487..94706 +
scaffold20528supercontigscaffold20528:54096..54311 -
Gbar_D07chromosomeGbar_D07:8959558..8959777 +
Gbar_A07chromosomeGbar_A07:10103464..10103677 +
D07chromosomeD07:8756817..8757036 +
A07chromosomeA07:9884617..9884832 +
CM017629.1chromosomeCM017629.1:9052630..9052850 +
CM017616.1chromosomeCM017616.1:9880970..9881199 +
CM017655.1chromosomeCM017655.1:9072324..9072545 +
CM017642.1chromosomeCM017642.1:10159628..10159855 +
CM017707.1chromosomeCM017707.1:8879368..8879587 +
CM017694.1chromosomeCM017694.1:10018718..10018935 +
D07chromosomeD07:9026161..9026381 +
A07chromosomeA07:10306961..10307171 +
Chr07chromosomeChr07:10323425..10323648 +
Chr07chromosomeChr07:45012663..45012878 -
B_07chromosomeB_07:10355877..10356081 +
Chr01chromosomeChr01:8723538..8723761 +
Chr_01chromosomeChr_01:8103207..8103427 +
Chr01chromosomeChr01:8651149..8651363 +
Chr01chromosomeChr01:7215431..7215648 +
Chr01chromosomeChr01:7420588..7420807 +
F07chromosomeF07:9368828..9369043 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1597_origBNL1597_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch07_At.07N/A167.5BNL1597View
2Emian-22 x 3-79, BC1 (2011)AD_ch07_At.07N/A28.35BNL1597View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch07_At.07N/A176.2BNL1597View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch07_At.07N/A79.42BNL1597View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch07_At.07N/A45.97BNL1597View
6Handan-208 x Pima-90, F2:3 (2007)AD_ch07_At.07N/A117.6BNL1597View
7Xinluzao-1 x Hai-7124, F2 (2008)AD_ch16_Dt.07N/A0BNL1597View
8Palmeri x K-101, F2 (2007)AD_ch07_At.07N/A169.2BNL1597View
9AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A17BNL1597View
10AD-genome wide Reference Map (2009)AD_ch07_At.07N/A162BNL1597View
11Deltapine-61 x Texas-701, F2 (2007)AD_ch07_At.07N/A12.8BNL1597-233View
12PD 94042 x (AD)4-08, F2 (2016)AD_ch07_At.07N/A181.5BNL1597View
Sequence
>BNL1597 ID=BNL1597; Name=BNL1597; organism=Gossypium hirsutum; type=genetic_marker; length=211bp
GGGCTTTCCGATACTGAACATAATATGGATCAGGAACAGCATTGAAAGCT
GGGGAGGGACATTGATGATTGGAAGATAAGTTTTTTTTTTTTTTCCCTCG
TGAAGTTTTGTATGTTTTGGCTGCCAACTGATGAGAGAGAGAGAGAGAGA
GAGAGAGAGTTGCTGATAGCCATAGAAAGGTTTGAAATCACATTGAACGC
CTTATTGCAGG