BNL1423, BNL1423 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1423
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1423_orig
Source Typegenomic
Repeat Motif(AG)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL1423_F: AAAAACCAATTGCCTCCAAA
Primer 2BNL1423_R: CTCCTAACGATCAATGGGGA
PolymorphismP_ BNL1423
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A09chromosomeA09:23818424..23818554 +
D09chromosomeD09:18515524..18515644 -
CM018223.1chromosomeCM018223.1:17304440..17304560 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:30383000..30383126 +
D10_09chromosomeD10_09:29625790..29625910 -
CM016622.1chromosomeCM016622.1:59582335..59582478 +
At_chr3chromosomeAt_chr3:14586190..14586320 +
At_chr3chromosomeAt_chr3:20721326..20721446 -
scaffold2376_A09supercontigscaffold2376_A09:13744..13874 -
D09chromosomeD09:18421797..18421917 -
Ghir_A09chromosomeGhir_A09:33043776..33043906 +
Ghir_D09chromosomeGhir_D09:18346758..18346878 -
A09chromosomeA09:35165777..35165907 +
D09chromosomeD09:18386119..18386239 -
A09chromosomeA09:34432384..34432514 +
D09chromosomeD09:17636430..17636550 -
A09chromosomeA09:31871781..31871911 +
D09chromosomeD09:17586418..17586538 -
Dt09chromosomeDt09:19032581..19032701 -
scaffold5542supercontigscaffold5542:53708..53828 -
Gbar_D09chromosomeGbar_D09:18420105..18420225 -
D09chromosomeD09:19756226..19756346 -
CM017618.1chromosomeCM017618.1:31886652..31886778 +
CM017644.1chromosomeCM017644.1:32778996..32779120 +
CM017657.1chromosomeCM017657.1:17759125..17759245 -
CM017696.1chromosomeCM017696.1:32484755..32484881 +
CM017709.1chromosomeCM017709.1:17736511..17736631 -
A09chromosomeA09:35270911..35271041 +
D09chromosomeD09:19125141..19125261 -
Chr09chromosomeChr09:31223514..31223640 -
Chr09chromosomeChr09:30932873..30932999 +
Chr09chromosomeChr09:17662009..17662129 -
B_02chromosomeB_02:32468244..32468364 -
Chr06chromosomeChr06:16493391..16493511 -
chr06chromosomechr06:14442343..14442463 -
Chr_06chromosomeChr_06:12880071..12880195 -
Chr06chromosomeChr06:17757393..17757513 -
Chr06chromosomeChr06:13918375..13918525 -
Chr06chromosomeChr06:9870855..9870977 -
Chr06chromosomeChr06:12424159..12424283 -
E09chromosomeE09:54929767..54929891 +
F09chromosomeF09:23419237..23419375 -
Chr09chromosomeChr09:58495135..58495278 -
Chr06chromosomeBNL1423:1..265 .
Chr06:17485423..17485678 -
scaffold198supercontigBNL1423:1..265 .
scaffold198:3037854..3038109 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1423_origBNL1423_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch09_At.09N/A163.7BNL1423View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch09_At.09N/A31.6BNL1423View
3Palmeri x K-101, F2 (2007)AD_ch09_At.09N/A30.4BNL1423View
4AD-genome wide Reference Map (2009)AD_ch09_At.09N/A58BNL1423View
5TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A113.26BNL1423View
6Zhongmiansuo-12 x 8891, RIL (2007)AD_ch09_At.09N/A36.7BNL1423View
7Hai-7124 x Junmian-1, BC1 (2008) partAD_ch09_At.09N/A78.7BNL1423View
8DH962 x Jinmian-6, F2 (2009)AD_ch09_At.09N/A28.7BNL1423View
9DH962 x Jinmian-6, F2 (2009)AD_ch09_At.09N/A28.7BNL1423View
10DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A42.26BNL1423View
11DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A42.26BNL1423View
12TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A28BNL1423View
13TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch09_At.09N/A36.8BNL1423View
14DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A3.9BNL1423View
15CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A47BNL1423View
16Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A121BNL1423View
17HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch09_At.09N/A18BNL1423-125View
18Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch09_At.09N/A4.5BNL1423-130View
19TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A27.98BNL1423View
Sequence
>BNL1423 ID=BNL1423; Name=BNL1423; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
AAAAACCAATTGCCTCCAAAAATTAATTTCTTTTAGAAATTTGAGAGAGA
GAGAGAGAGAGAGAGATTACCATAAGCCGAAGGCACCGGTAGCGAAGAGA
GCAGTCCAGGTTCCCCATTGATCGTTAGGAG