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Marker Overview
Name | BNL1408 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL1408_orig
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Source Type | genomic |
Repeat Motif | (AG)17 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL1408_F: AAGGGAGAGAAACGGAGAGC |
Primer 2 | BNL1408_R: CATTTCACCTCTCCCACCAC |
Polymorphism | P_ BNL1408 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch11_At.11 | N/A | 86.7 | BNL1408 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch11_At.11 | N/A | 73.64 | BNL1408 | View |
3 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch11_At.11 | N/A | 236.2 | BNL1408 | View |
4 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 114 | BNL1408 | View |
5 | TM-1 x 3-79, RIL (2006) | AD_ch11_At.11 | N/A | 62.6 | BNL1408 | View |
6 | TM-1 x 3-79, RIL (2012) | AD_ch11_At.11 | N/A | 111.2 | BNL1408 | View |
7 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch11_At.11 | N/A | 100.7 | BNL1408 | View |
8 | Yumian-1 x T586, F2:3 (2005) | AD_ch05_At.05 | N/A | 43.6 | BNL1408 | View |
9 | Emian-22 x 3-79, BC1 (2011) | AD_ch11_At.11 | N/A | 84.1 | BNL1408 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 153 | BNL1408 | View |
11 | Yumian-1 x T586, F2:7 (2008) | AD_ch21_Dt.11 | N/A | 47.7 | BNL1408 | View |
12 | Yumian-1 x T586, RIL (2006) | AD_ch21_Dt.11 | N/A | 22.5 | BNL1408 | View |
13 | NemX x SJ-2, RIL (2005) | AD_ch11_At.11 | N/A | 208.6 | BNL1408 | View |
14 | Yumian-1 x T586, RIL (2015) | AD_ch21_Dt.11 | N/A | 136 | BNL1408 | View |
15 | TM-1 x 3-79, RIL (2014) | AD_ch11_At.11 | N/A | 114.1 | BNL1408 | View |
16 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch21_Dt.11 | N/A | 122.8 | BNL1408 | View |
17 | Emian-22 x 3-79, BC1 (2015) | AD_ch11_At.11 | N/A | 150 | BNL1408 | View |
18 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch11_At.11 | N/A | 186.4 | BNL1408 | View |
19 | Monsanto SSR Bin Map, (2009) | AD_ch11_At.11 | N/A | 101 | BNL1408 | View |
20 | SG 747 x Giza 75, BIL (2013) | AD_ch11_At.11 | N/A | 9.3 | BNL1408a | View |
21 | Monsanto SSR Bin Map, (2009) | AD_ch11_At.11 | N/A | 101 | BNL1408a | View |
22 | TM-1 x Hai-7124, BC1 (2007) | AD_ch11_At.11 | N/A | 70.1 | BNL1408-200 | View |
23 | TM-1 x Hai-7124, BC1 (2008) | AD_ch11_At.11 | N/A | 70.23 | BNL1408-200 | View |
24 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch11_At.11 | N/A | 67.6 | BNL1408-200 | View |
25 | TM-1 x Hai-7124, BC1 (2012) | AD_ch11_At.11 | N/A | 92.3 | BNL1408-200 | View |
26 | TM-1 x Hai-7124, BC1 (2007) | AD_ch21_Dt.11 | N/A | 75 | BNL1408-430 | View |
27 | TM-1 x Hai-7124, BC1 (2008) | AD_ch21_Dt.11 | N/A | 67.16 | BNL1408-430 | View |
28 | TM-1 x Hai-7124, BC1 (2012) | AD_ch21_Dt.11 | N/A | 113.4 | BNL1408-430 | View |
29 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch11_At.11 | N/A | 66.2 | BNL1408-195 | View |
30 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch21_Dt.11 | N/A | 97 | BNL1408-400 | View |
31 | TM-1 x Hai-7124, BC1 (2012) | AD_ch21_Dt.11 | N/A | 138.1 | BNL1408-400 | View |
32 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch21_Dt.11 | N/A | 134.5 | BNL1408-215 | View |
33 | Yumian-1 x T586, RIL (2009) | AD_ch21_Dt.11 | N/A | 51.1 | BNL1408/200y(C11) | View |
34 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch05_At.05 | N/A | 43.6 | BNL1408(C5,C18,D03) | View |
35 | TM-1 x 3-79, RIL (2011) | AD_ch11_At.11 | N/A | 29.4 | BNL1408_207/197 | View |
36 | SG 747 x Giza 75, BIL (2013) | AD_ch21_Dt.11 | N/A | 11.1 | BNL1408b | View |
37 | TM-1 x 3-79, RIL (2012.v3) | AD_ch11_At.11 | N/A | 114.08 | BNL1408 | View |
38 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch11_At.11 | N/A | 87.5 | BNL1408 | View |
Sequence
>BNL1408 ID=BNL1408; Name=BNL1408; organism=Gossypium hirsutum; type=genetic_marker; length=199bp AAGGGAGAGAAACGGAGAGCGGATTTATAGCGTGAAAGTGAAGAATTTAA ATAGAATATAAAATTCTAGAATAAAAATATAATATAATAAAAATAAAGAA AACAAAGCGGATAGTCCCAGAAATTGCCTGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGTTGTTTGNNGTTTGGGTGGTGGGAGAGGTGAAATG
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