BNL1035, BNL1035 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1035
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1035_orig
Source Typegenomic
Repeat Motif(TC)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL1035_F: AACCATGCAAATGTCTATTGCA
Primer 2BNL1035_R: CATGTGTGTGTGTGTGTGTGTGT
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_06chromosomeD5_06:6253276..6253391 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:6282780..6282908 +
Dt_chr10chromosomeDt_chr10:24449823..24449953 -
CM017628.1chromosomeCM017628.1:7022122..7022254 +
CM017641.1chromosomeCM017641.1:7997090..7997225 +
CM017693.1chromosomeCM017693.1:8217224..8217371 +
Chr06chromosomeChr06:8174033..8174163 +
Chr06chromosomeChr06:6138400..6138515 +
chr10chromosomechr10:5845688..5845902 +
Chr10chromosomeBNL1035:1..507 .
Chr10:6168739..6169227 +
Chr10chromosomeBNL1035:1..507 .
Chr10:5923644..5924132 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1035_origBNL1035_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch06_At.06N/A40BNL1035View
2TM-1 x 3-79, RIL (2006)AD_ch06_At.06N/A0BNL1035View
3TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A82.92BNL1035View
4Yumian-1 x 7235, RIL (2015)AD_ch25_Dt.06N/A63.8BNL1035View
5TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A82.9BNL1035View
60-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A92.41BNL1035View
70-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A79.4BNL1035View
8Monsanto SSR Bin Map, (2009)AD_ch06_At.06N/A81BNL1035View
9TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A82.92BNL1035View
Sequence
>BNL1035 ID=BNL1035; Name=BNL1035; organism=Gossypium hirsutum; type=genetic_marker; length=135bp
AACCATGCAAATGTCTATTGCAGGCTATCTGTACTCTCTAAGTGCTTCAA
CTCTTAGCAAGGAGTGGACTAAGGTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCACACACACACACACACACACACACACATG