BNL1022, BNL1022 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1022
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1022_orig
Source Typegenomic
Repeat Motif(CA)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL1022_F: TATGGGAATCAAAAGCCTCG
Primer 2BNL1022_R: TCGATCAAAATCCAATTCCA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:2966757..2966890 +
CM018221.1chromosomeCM018221.1:2703788..2703915 +
CM018208.1chromosomeCM018208.1:3233788..3233908 +
D5_07chromosomeD5_07:2667527..2667650 +
KI_07chromosomeKI_07:35082514..35082662 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:3128321..3128441 +
D10_07chromosomeD10_07:51110736..51110874 -
Dt_chr1chromosomeDt_chr1:43213967..43214100 -
D07chromosomeD07:2473930..2474063 +
Ghir_D07chromosomeGhir_D07:2950617..2950750 +
Ghir_A07chromosomeGhir_A07:3048442..3048562 +
D07chromosomeD07:2822668..2822801 +
D07chromosomeD07:2910145..2910278 +
D07chromosomeD07:2795573..2795706 +
At07chromosomeAt07:2164382..2164501 +
At07chromosomeAt07:2167087..2167207 +
scaffold39418supercontigscaffold39418:10236..10355 +
scaffold39418supercontigscaffold39418:12941..13061 +
scaffold12002supercontigscaffold12002:24344..24471 -
Gbar_D07chromosomeGbar_D07:2880638..2880765 +
Gbar_A07chromosomeGbar_A07:3087612..3087732 +
D07chromosomeD07:2846495..2846622 +
A07chromosomeA07:3001261..3001381 +
CM017629.1chromosomeCM017629.1:3089914..3090043 +
CM017616.1chromosomeCM017616.1:2912909..2913029 +
CM017655.1chromosomeCM017655.1:2927890..2928017 +
CM017642.1chromosomeCM017642.1:3045481..3045601 +
CM017707.1chromosomeCM017707.1:2871691..2871818 +
CM017694.1chromosomeCM017694.1:3094018..3094138 +
D07chromosomeD07:2972050..2972183 +
Chr07chromosomeChr07:3111871..3111991 +
Chr07chromosomeChr07:3103769..3103889 +
Chr07chromosomeChr07:50866976..50867099 -
B_07chromosomeB_07:3290629..3290749 +
Chr01chromosomeChr01:2739570..2739692 +
chr01chromosomechr01:2732791..2732929 +
Chr_01chromosomeChr_01:2839744..2839878 +
Chr01chromosomeChr01:2825934..2826064 +
Chr01chromosomeChr01:2095618..2095742 +
Chr01chromosomeChr01:2464751..2464875 +
Chr07chromosomeChr07:3578154..3578280 +
Chr01chromosomeBNL1022:1..204 .
Chr01:2652743..2652936 +
scaffold62supercontigBNL1022:1..204 .
scaffold62:50824..51017 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1022_origBNL1022_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A0BNL1022View
2Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A124.95BNL1022View
3SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A10.2BNL1022View
4Monsanto SSR Bin Map, (2009)AD_ch16_Dt.07N/A181BNL1022View
5TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A19.77BNL1022-150View
6TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A102.3BNL1022-150View
7TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A21.3BNL1022-155View
8H16 x T586, F2 (2009)AD_ch16_Dt.07N/A21.3BNL1022-155View
9TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A110.3BNL1022-155View
Sequence
>BNL1022 ID=BNL1022; Name=BNL1022; organism=Gossypium hirsutum; type=genetic_marker; length=134bp
TATGGGAATCAAAAGCCTCGTATCCATGTATATGTGCCTAACACACACAC
ACACACACACACACACATAAACGAAGATTTCGCATAATATAGCTCAAGTC
TGTAAACCAATTATTGGAATTGGATTTTGATCGA