BNL0834, BNL0834 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0834
AliasBNL834
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0834_orig
Source Typegenomic
Repeat Motif(CA)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL0834_F: TCGAGATTCATGGCTCTCCT
Primer 2BNL0834_R: TGGCAAAAGTGGACATACCA
PolymorphismP_ BNL0834
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:858604..858752 +
CM018217.1chromosomeCM018217.1:790233..790377 +
D5_02chromosomeD5_02:747928..748066 +
KI_06chromosomeKI_06:40320544..40320680 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:894361..894491 +
D10_02chromosomeD10_02:704496..704664 +
CM016615.1chromosomeCM016615.1:846411..846555 +
Dt_chr5chromosomeDt_chr5:16951417..16951565 -
Dt_chr5chromosomeDt_chr5:16931563..16931711 -
D03chromosomeD03:823218..823366 +
Ghir_D03chromosomeGhir_D03:819482..819628 +
Ghir_A02chromosomeGhir_A02:107265160..107265284 -
D03chromosomeD03:805303..805451 +
D03chromosomeD03:817263..817411 +
D03chromosomeD03:821768..821916 +
Dt03chromosomeDt03:972064..972208 +
scaffold15604supercontigscaffold15604:612958..613102 +
Gbar_D03chromosomeGbar_D03:782896..783040 +
D03chromosomeD03:790756..790900 +
CM017625.1chromosomeCM017625.1:779515..779661 +
CM017651.1chromosomeCM017651.1:846918..847058 +
CM017637.1chromosomeCM017637.1:109060853..109060987 -
CM017703.1chromosomeCM017703.1:812540..812684 +
D03chromosomeD03:862023..862171 +
Chr02chromosomeChr02:92107173..92107305 -
Chr02chromosomeChr02:101708981..101709111 -
Chr02chromosomeChr02:758261..758399 +
B_04chromosomeB_04:73107321..73107467 -
Chr03chromosomeChr03:764031..764171 +
Chr03chromosomeChr03:767805..767945 +
Chr03chromosomeChr03:646666..646804 +
Chr03chromosomeChr03:593400..593574 +
Chr03chromosomeChr03:796659..796851 +
E02chromosomeE02:553967..554097 +
Chr02chromosomeChr02:138817307..138817443 -
Chr03chromosomeBNL0834:1..266 .
Chr03:756701..756957 +
Chr3chromosomeBNL0834:1..266 .
Chr3:26065442..26065698 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0834_origBNL0834_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch17_Dt.03N/A136.2BNL834View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A148BNL834View
3Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A127.38BNL834View
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch17_Dt.03N/A91.4BNL834View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A70.63BNL0834View
6AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A159BNL0834View
7TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A6.75BNL0834View
8TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A119.7BNL0834View
9Monsanto SSR Bin Map, (2009)AD_ch17_Dt.03N/A121BNL0834View
10TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A16.8BNL834-220View
11TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A83.57BNL834-220View
12TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A15BNL834-220View
13TM-1 x Hai-7124, BC1 (2005.v0)AD_ch17_Dt.03N/A2.9BNL834-147View
14TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A119.67BNL0834View
15PD 94042 x (AD)4-08, F2 (2016)AD_ch02_At.02N/A4.9BNL834View
Sequence
>BNL0834 ID=BNL0834; Name=BNL0834; organism=Gossypium hirsutum; type=genetic_marker; length=148bp
TCGAGATTCATGGCTCTCCTTTGAGTCCGACCTGTTCAAAGTGGCAATCA
TGATGAAACTCATTCGCTCATATATACACATGCACACACACACACACACA
CACACACATATATACATAGACCACTACCTGGTATGTCCACTTTTGCCA