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Marker Overview
| Name | BNL0827 |
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| Alias | BNL827
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL0827_orig
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| Source Type | genomic |
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| Repeat Motif | (CA)19 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL0827_F: AAGCTCCACGTGCTCAAGTT |
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| Primer 2 | BNL0827_R: CTCATGTTGTCGGTGGTGTT |
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| Polymorphism | P_ BNL0827 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 7235 x TM-1, RIL (2007) | AD_ch25_Dt.06 | N/A | 26.3 | BNL827 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch25_Dt.06 | N/A | 132.2 | BNL827 | View |
| 3 | PD6992 x SM3, F2:3 (2005) | AD_ch25_Dt.06 | N/A | 0 | BNL827 | View |
| 4 | Emian-22 x 3-79, BC1 (2015) | AD_ch25_Dt.06 | N/A | 12 | BNL827 | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch06_At.06 | N/A | 122.63 | BNL0827a | View |
| 6 | TM-1 x 3-79, RIL (2014) | AD_ch06_At.06 | N/A | 122.6 | BNL0827a | View |
| 7 | Monsanto SSR Bin Map, (2009) | AD_ch06_At.06 | N/A | 101 | BNL0827a | View |
| 8 | TM-1 x 3-79, RIL (2012) | AD_ch25_Dt.06 | N/A | 116.26 | BNL0827b | View |
| 9 | TM-1 x 3-79, RIL (2014) | AD_ch25_Dt.06 | N/A | 115.9 | BNL0827b | View |
| 10 | Monsanto SSR Bin Map, (2009) | AD_ch25_Dt.06 | N/A | 101 | BNL0827b | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch25_Dt.06 | N/A | 10 | bnl0827 | View |
| 12 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch25_Dt.06 | N/A | 22.2 | bnl0827 | View |
| 13 | Yumian-1 x 7235, RIL (2015) | AD_ch25_Dt.06 | N/A | 81.1 | bnl0827 | View |
| 14 | W10 x TM-1, F2:3 (2015) | AD_ch25_Dt.06 | N/A | 82.5 | bnl0827 | View |
| 15 | GX1135 x VGX100-2, RIL (2016) | AD_ch25_Dt.06 | N/A | 6.4 | bnl0827 | View |
| 16 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch25_Dt.06 | N/A | 68.2 | bnl0827 | View |
| 17 | LMY22 x LY343, RIL (2016) | chr.25 | N/A | 44.3 | bnl0827 | View |
| 18 | TM-1 x Hai-7124, BC1 (2007) | AD_ch25_Dt.06 | N/A | 19.1 | BNL827-280 | View |
| 19 | TM-1 x Hai-7124, BC1 (2008) | AD_ch25_Dt.06 | N/A | 119.95 | BNL827-280 | View |
| 20 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch25_Dt.06 | N/A | 14.7 | BNL827-280 | View |
| 21 | TM-1 x Hai-7124, BC1 (2012) | AD_ch25_Dt.06 | N/A | 128.7 | BNL827-280 | View |
| 22 | TM-1 x 3-79, RIL (2011) | AD_ch19_Dt.05 | N/A | 39.3 | BNL0827_186/190 | View |
| 23 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch25_Dt.06 | N/A | 50.5 | BNL827b | View |
| 24 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch25_Dt.06 | N/A | 65.5 | BNL827a | View |
| 25 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch25_Dt.06 | N/A | 12.89 | BNL0827 | View |
| 26 | TM-1 x 3-79, RIL (2012.v3) | AD_ch06_At.06 | N/A | 122.63 | BNL0827a | View |
| 27 | TM-1 x 3-79, RIL (2012.v3) | AD_ch25_Dt.06 | N/A | 115.93 | BNL0827b | View |
| 28 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch06_At.06 | N/A | 20.1 | BNL827 | View |
| 29 | MGG-293-793, MAGIC (2018) | AD_ch25_Dt.06 | N/A | 12 | BNL827 | View |
Sequence
>BNL0827 ID=BNL0827; Name=BNL0827; organism=Gossypium hirsutum; type=genetic_marker; length=268bp
AAGCTCCACGTGCTCAAGTTCCTCAGCTGGTAGAAGCTTCAAGCAACCTG
ATAAATTCCAAAAACATTGCCATTCATTCATTCATTGACCTATACACACA
CACACACACACACACACACACACACACACACATATCCTACTTTGGTAACA
ATTTTGGACACAAAAAATGAAAAGATTTCACATTTCATTATAAATAAAGC
TGGAAAAAAGTGGGATTTCAATTGATTGATATTCTACTCACGTTCTCTAA
CACCACCGACAACATGAG
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