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Marker Overview
Name | BNL0625 |
Alias | BNL625
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Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL0625_orig
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Source Type | genomic |
Repeat Motif | (AG)14 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL0625_F: AGAGAGGGGGGAAAAGTTCA |
Primer 2 | BNL0625_R: GCCAGGCATGGTTTCTATGT |
Polymorphism | P_ BNL0625 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch11_At.11 | N/A | 119.3 | BNL625 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch11_At.11 | N/A | 100.1 | BNL625 | View |
3 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch04_At.04 | N/A | 105.1 | BNL625 | View |
4 | Yumian-1 x T586, F2:3 (2005) | AD_chU | N/A | 19.6 | BNL625 | View |
5 | Emian-22 x 3-79, BC1 (2011) | AD_ch11_At.11 | N/A | 98.33 | BNL625 | View |
6 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch11_At.11 | N/A | 139.5 | BNL625 | View |
7 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch11_At.11 | N/A | 0.6 | BNL625-234 | View |
8 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch11_At.11 | N/A | 86.77 | BNL0625 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 72 | BNL0625 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch04_At.04 | N/A | 142 | BNL0625 | View |
11 | TM-1 x 3-79, RIL (2006) | AD_ch11_At.11 | N/A | 78.8 | BNL0625 | View |
12 | Yumian-1 x T586, F2:7 (2008) | AD_ch11_At.11 | N/A | 0 | BNL0625 | View |
13 | AD-genome wide Reference Map (2009) | AD_ch12_At.12 | N/A | 77 | BNL0625 | View |
14 | TM-1 x 3-79, RIL (2012) | AD_ch11_At.11 | N/A | 99.78 | BNL0625 | View |
15 | Yumian-1 x T586, RIL (2006) | AD_ch11_At.11 | N/A | 55.7 | BNL0625 | View |
16 | Yumian-1 x T586, RIL (2015) | AD_ch11_At.11 | N/A | 76.5 | BNL0625 | View |
17 | TM-1 x 3-79, RIL (2014) | AD_ch11_At.11 | N/A | 102.5 | BNL0625 | View |
18 | Monsanto SSR Bin Map, (2009) | AD_ch11_At.11 | N/A | 101 | BNL0625 | View |
19 | Palmeri x K-101, F2 (2007) | AD_ch11_At.11 | N/A | 69.4 | BNL625b | View |
20 | Palmeri x K-101, F2 (2007) | AD_ch12_At.12 | N/A | 83.8 | BNL625a | View |
21 | TM-1 x Hai-7124, BC1 (2007) | AD_ch11_At.11 | N/A | 75.1 | BNL625-205 | View |
22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch11_At.11 | N/A | 73.56 | BNL625-205 | View |
23 | TM-1 x Hai-7124, BC1 (2012) | AD_ch11_At.11 | N/A | 87.4 | BNL625-205 | View |
24 | TM-1 x Hai-7124, BC1 (2007) | AD_ch11_At.11 | N/A | 80.3 | BNL625-185 | View |
25 | TM-1 x Hai-7124, BC1 (2008) | AD_ch11_At.11 | N/A | 80.68 | BNL625-185 | View |
26 | TM-1 x Hai-7124, BC1 (2012) | AD_ch11_At.11 | N/A | 82 | BNL625-185 | View |
27 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch19_Dt.05 | N/A | 47.5 | BNL625-235 | View |
28 | Yumian-1 x T586, RIL (2009) | AD_ch11_At.11 | N/A | 55.1 | BNL0625/120t(C11) | View |
29 | Yumian-1 x T586, F2:3 (2005.v0) | AD_chU | N/A | 19.6 | BNL625(C12) | View |
30 | TM-1 x 3-79, RIL (2012.v3) | AD_ch11_At.11 | N/A | 102.45 | BNL0625 | View |
31 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch11_At.11 | N/A | 119.4 | BNL625 | View |
Sequence
>BNL0625 ID=BNL0625; Name=BNL0625; organism=Gossypium hirsutum; type=genetic_marker; length=244bp AGAGAGGGGGGAAAAGTTCAAATGNTTTAAAAGAGAGAGAGAGAGAGAGA GAGAGAGAGAAGACATATNNCCAATAACTAAACTGAAAGCTTGAAAGAAT CGCCTTTTGAGTTTATAGCAAAAGCAGTCATCCCAAAAATCCTAGGAAGA TTAGATACACCAACTTCTAACAAGCGATGATAGAATTCCTATAACAAAAA AAATTCCTCAAACAATATGACAAAACATAGAAACCATGCCTGGC
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