BNL0448, BNL0448 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0448
AliasBNL448
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0448_orig
Source Typegenomic
Repeat Motif(CT)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL0448_F: GCAGCTTGCTTTTCTGCTTC
Primer 2BNL0448_R: ACGCAAGCTTGGTCAATACC
PolymorphismP_ BNL0448
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:95087537..95087742 +
A05chromosomeA05:95070711..95070916 +
D04chromosomeD04:5005083..5005287 -
CM018206.1chromosomeCM018206.1:97410944..97411149 +
CM018218.1chromosomeCM018218.1:4596196..4596399 -
D5_04chromosomeD5_04:45689161..45689365 +
KI_06chromosomeKI_06:46035958..46036164 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:93081930..93082135 +
CM016617.1chromosomeCM016617.1:7298416..7298634 -
scaffold1379.1supercontigscaffold1379.1:119132..119347 +
At_chr9chromosomeAt_chr9:59689643..59689848 -
A05chromosomeA05:86777392..86777597 +
D04chromosomeD04:4296403..4296618 -
Ghir_A05chromosomeGhir_A05:103898976..103899181 +
Ghir_D04chromosomeGhir_D04:4973943..4974158 -
A05chromosomeA05:105498738..105498943 +
D04chromosomeD04:4906335..4906550 -
A05chromosomeA05:104001894..104002099 +
D04chromosomeD04:4840294..4840509 -
A05chromosomeA05:101930724..101930929 +
D04chromosomeD04:4575077..4575292 -
At05chromosomeAt05:87747159..87747363 +
scaffold14376supercontigscaffold14376:75171..75375 +
scaffold11729supercontigscaffold11729:97631..97835 +
Gbar_A05chromosomeGbar_A05:97447862..97448067 +
Gbar_D04chromosomeGbar_D04:4586689..4586892 -
A05chromosomeA05:102361905..102362110 +
D04chromosomeD04:4563910..4564113 -
CM017614.1chromosomeCM017614.1:99665143..99665348 +
CM017626.1chromosomeCM017626.1:4699478..4699683 -
CM017640.1chromosomeCM017640.1:108107092..108107297 +
CM017652.1chromosomeCM017652.1:4848406..4848629 -
CM017692.1chromosomeCM017692.1:100298913..100299118 +
CM017704.1chromosomeCM017704.1:4846767..4846970 -
A05chromosomeA05:105753367..105753572 +
D04chromosomeD04:5329295..5329510 -
Chr04chromosomeChr04:5736528..5736733 -
Chr04chromosomeChr04:46119943..46120147 +
B_02chromosomeB_02:79061744..79061947 +
Chr12chromosomeChr12:4829830..4830033 -
chr12chromosomechr12:4346806..4347044 -
Chr_12chromosomeChr_12:3327982..3328190 -
Chr12chromosomeChr12:4568290..4568493 -
Chr12chromosomeChr12:4778141..4778362 -
Chr12chromosomeChr12:3176898..3177101 -
E04chromosomeE04:7319473..7319691 -
F04chromosomeF04:4660012..4660215 -
Chr04chromosomeChr04:6727146..6727356 -
Chr12chromosomeBNL0448:1..376 .
Chr12:4549300..4549664 -
Chr12chromosomeBNL0448:1..376 .
Chr12:21740672..21741036 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0448_origBNL0448_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch22_Dt.04N/A17.9BNL448View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch22_Dt.04N/A110.4BNL448View
3Hai-7124 x Junmian-1, BC1 (2008) partAD_ch22_Dt.04N/A43.4BNL448View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch22_Dt.04N/A0BNL448View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A20.3BNL448View
6Yumian-1 x T586, F2:3 (2005)AD_ch22_Dt.04N/A8.6BNL448View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch22_Dt.04N/A0BNL448View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A109.7BNL448View
9Handan-208 x Pima-90, F2:3 (2007)AD_ch20_Dt.10N/A0.4BNL448aView
10Handan-208 x Pima-90, F2:3 (2007)AD_ch20_Dt.10N/A14BNL448bView
11TM-1 x 3-79, RIL (2006)AD_ch22_Dt.04N/A50.2BNL0448View
12TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A208.2BNL0448View
13AD-genome wide Reference Map (2009)AD_ch22_Dt.04N/A70BNL0448View
14Yumian-1 x T586, RIL (2006)AD_ch22_Dt.04N/A59.4BNL0448View
15Yumian-1 x T586, RIL (2015)AD_ch22_Dt.04N/A18.9BNL0448View
16TM-1 x 3-79, RIL (2014)AD_ch22_Dt.04N/A17.6BNL0448View
17Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A0BNL0448View
18Monsanto SSR Bin Map, (2009)AD_ch22_Dt.04N/A61BNL0448cView
19TM-1 x Hai-7124, BC1 (2007)AD_ch22_Dt.04N/A22.7BNL448-220View
20TM-1 x Hai-7124, BC1 (2008)AD_ch22_Dt.04N/A22.09BNL448-220View
21Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch22_Dt.04N/A81.3BNL448-220View
22TM-1 x Hai-7124, BC1 (2012)AD_ch22_Dt.04N/A99.5BNL448-220View
23Yumian-1 x T586, RIL (2009)AD_ch22_Dt.04N/A42.3BNL0448/205t(C20,C22)View
24Yumian-1 x T586, F2:3 (2005.v0)AD_ch22_Dt.04N/A8.6BNL448(C22,C20)View
25CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A111.2BNL448View
26TM-1 x 3-79, RIL (2012.v3)AD_ch22_Dt.04N/A17.59BNL0448View
27PD 94042 x (AD)4-08, F2 (2016)AD_ch22_Dt.04N/A33.2BNL448View
Sequence
>BNL0448 ID=BNL0448; Name=BNL0448; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
GCAGCTTGCTTTTCTGCTTCTATTACAGCCTCCAGCTAAGAAAGACGAAA
AATGTAAACAAAAATGAAGCTATAAATAAAATTACAGAAAATGACCAAAA
AAGAGAATTAGAACTGAATTAACTTATAAACACAAATAGTTTTTTTAAGG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAAAGAAACCTGTTGCTGGTA
TTGACCAAGCTTGCGT