BNL0409, BNL0409 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0409
AliasBNL409
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0409_orig
Source Typegenomic
Repeat Motif(GA)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL0409_F: AGAAGTCGGACGTGGAAAGA
Primer 2BNL0409_R: GCCGTTTTCCTCAGTGATGT
PolymorphismP_ BNL0409
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A13chromosomeA13:808216..808317 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:756829..756925 -
At_chr9chromosomeAt_chr9:55426004..55426105 -
A13chromosomeA13:603331..603432 -
Ghir_A13chromosomeGhir_A13:566622..566723 -
A13chromosomeA13:792102..792203 -
A13chromosomeA13:827281..827382 -
A13chromosomeA13:651019..651120 -
scaffold3562supercontigscaffold3562:52942..53017 +
Gbar_A13chromosomeGbar_A13:737069..737144 -
CM017622.1chromosomeCM017622.1:791265..791364 -
CM017648.1chromosomeCM017648.1:727987..728084 -
A13chromosomeA13:818969..819070 -
Chr13chromosomeChr13:736951..737047 -
Chr13chromosomeChr13:775018..775114 -
Chr13chromosomeBNL0409:1..310 .
Chr13:548161..548339 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0409_origBNL0409_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A194.7BNL409View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A217.4BNL409View
3H18 x TM-1, F2 (2005)AD_ch13_At.13N/A1.1BNL409View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch13_At.13N/A65.44BNL0409View
5TM-1 x 3-79, RIL (2012)AD_ch13_At.13N/A13.43BNL0409View
6AD-genome wide Reference Map (2009)AD_ch13_At.13N/A209BNL0409View
7TM-1 x 3-79, RIL (2014)AD_ch13_At.13N/A13.2BNL0409View
8Monsanto SSR Bin Map, (2009)AD_ch13_At.13N/A141BNL0409View
9Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch09_At.09N/A11BNL409-100View
10TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A126.6BNL409-100View
11TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A128.15BNL409-100View
12TM-1 x Hai-7124, BC1 (2005.v0)AD_ch09_At.09N/A45.38BNL409-100View
13TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A8.7BNL409-100View
14TM-1 x 3-79, RIL (2012.v3)AD_ch13_At.13N/A13.18BNL0409View
Sequence
>BNL0409 ID=BNL0409; Name=BNL0409; organism=Gossypium hirsutum; type=genetic_marker; length=102bp
AGAAGTCGGACGTGGAAAGACAGTAAATATCGAGAGAGAGAGAGAGAGAG
AGAGAACTGACTAGGAAGTAGGATATGAAAAGACATCACTGAGGAAAACG
GC