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Marker Overview
Name | BNL0409 |
Alias | BNL409
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Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL0409_orig
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Source Type | genomic |
Repeat Motif | (GA)12 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL0409_F: AGAAGTCGGACGTGGAAAGA |
Primer 2 | BNL0409_R: GCCGTTTTCCTCAGTGATGT |
Polymorphism | P_ BNL0409 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch13_At.13 | N/A | 194.7 | BNL409 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch13_At.13 | N/A | 217.4 | BNL409 | View |
3 | H18 x TM-1, F2 (2005) | AD_ch13_At.13 | N/A | 1.1 | BNL409 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch13_At.13 | N/A | 65.44 | BNL0409 | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch13_At.13 | N/A | 13.43 | BNL0409 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 209 | BNL0409 | View |
7 | TM-1 x 3-79, RIL (2014) | AD_ch13_At.13 | N/A | 13.2 | BNL0409 | View |
8 | Monsanto SSR Bin Map, (2009) | AD_ch13_At.13 | N/A | 141 | BNL0409 | View |
9 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch09_At.09 | N/A | 11 | BNL409-100 | View |
10 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 126.6 | BNL409-100 | View |
11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 128.15 | BNL409-100 | View |
12 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch09_At.09 | N/A | 45.38 | BNL409-100 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 8.7 | BNL409-100 | View |
14 | TM-1 x 3-79, RIL (2012.v3) | AD_ch13_At.13 | N/A | 13.18 | BNL0409 | View |
Sequence
>BNL0409 ID=BNL0409; Name=BNL0409; organism=Gossypium hirsutum; type=genetic_marker; length=102bp AGAAGTCGGACGTGGAAAGACAGTAAATATCGAGAGAGAGAGAGAGAGAG AGAGAACTGACTAGGAAGTAGGATATGAAAAGACATCACTGAGGAAAACG GC
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