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Marker Overview
| Name | BNL0341 |
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| Alias | BNL341
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL0341_orig
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| Source Type | genomic |
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| Repeat Motif | (GA)14 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL0341_F: ACCTGGGGTACTTGTCCACA |
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| Primer 2 | BNL0341_R: CCATCCCATTTGTGATACCC |
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| Polymorphism | P_ BNL0341 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Acala-44 x Pima S-7, F2 (2004) | AD_ch26_Dt.12 | N/A | 73.5 | BNL341 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch26_Dt.12 | N/A | 80.1 | BNL341 | View |
| 3 | Emian-22 x 3-79, BC1 (2011) | AD_ch26_Dt.12 | N/A | 54 | BNL341 | View |
| 4 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch26_Dt.12 | N/A | 89.1 | BNL341 | View |
| 5 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch26_Dt.12 | N/A | 20.3 | BNL341 | View |
| 6 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch26_Dt.12 | N/A | 136.4 | BNL341 | View |
| 7 | Palmeri x K-101, F2 (2007) | AD_ch26_Dt.12 | N/A | 77.5 | BNL341 | View |
| 8 | 3-79 x NM24016, RIL (2008) | AD_ch26_Dt.12 | N/A | 61.4 | BNL341 | View |
| 9 | Emian-22 x 3-79, BC1 (2015) | AD_ch26_Dt.12 | N/A | 110.1 | BNL341 | View |
| 10 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch26_Dt.12 | N/A | 80.4 | BNL341 | View |
| 11 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch26_Dt.12 | N/A | 51.31 | BNL0341 | View |
| 12 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch26_Dt.12 | N/A | 37.79 | BNL0341 | View |
| 13 | TM-1 x 3-79, RIL (2006) | AD_ch26_Dt.12 | N/A | 24.7 | BNL0341 | View |
| 14 | TM-1 x 3-79, RIL (2012) | AD_ch26_Dt.12 | N/A | 56.76 | BNL0341 | View |
| 15 | AD-genome wide Reference Map (2009) | AD_ch26_Dt.12 | N/A | 150 | BNL0341 | View |
| 16 | TM-1 x 3-79, RIL (2014) | AD_ch26_Dt.12 | N/A | 69.2 | BNL0341 | View |
| 17 | SG 747 x Giza 75, BIL (2013) | AD_ch26_Dt.12 | N/A | 69.4 | BNL0341 | View |
| 18 | Monsanto SSR Bin Map, (2009) | AD_ch26_Dt.12 | N/A | 61 | BNL0341 | View |
| 19 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch12_At.12 | N/A | 114.7 | BNL341a | View |
| 20 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch26_Dt.12 | N/A | 18 | BNL341-128 | View |
| 21 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch26_Dt.12 | N/A | 35.6 | BNL341-128 | View |
| 22 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch11_At.11 | N/A | 92.7 | BNL341-128 | View |
| 23 | Monsanto SSR Bin Map, (2009) | AD_ch26_Dt.12 | N/A | 61 | BNL0341b | View |
| 24 | TM-1 x Hai-7124, BC1 (2008) | AD_ch26_Dt.12 | N/A | 68.61 | BNL341-130 | View |
| 25 | TM-1 x Hai-7124, BC1 (2007) | AD_ch26_Dt.12 | N/A | 69.4 | BNL341-130 | View |
| 26 | TM-1 x Hai-7124, BC1 (2012) | AD_ch26_Dt.12 | N/A | 70.8 | BNL341-130 | View |
| 27 | TM-1 x 3-79, RIL (2012.v3) | AD_ch26_Dt.12 | N/A | 69.15 | BNL0341 | View |
| 28 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch26_Dt.12 | N/A | 108 | BNL341 | View |
Sequence
>BNL0341 ID=BNL0341; Name=BNL0341; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
ACCTGGGGTACTTGTCCACAATCTTACTTTCCTCAGAGGAACAACAAAGG
AATGAGCAAACAACTGATTGAGCAATATTTAACGAGAGAGAGAGAGAGAG
AGAGAGAGAGAAGGGTATCACAAATGGGATGG
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