BNL0244, BNL0244 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0244
AliasBNL244
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0244_orig
Source Typegenomic
Repeat Motif(AG)15, (CT)15, (TC)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL0244_F: AGATTGAAATGCAGCTTCGG
Primer 2BNL0244_R: TTTGGAAGAGCACAAAACCC
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:59430091..59430304 -
A03chromosomeA03:93298054..93298253 -
CM018216.1chromosomeCM018216.1:55872625..55872844 -
CM018204.1chromosomeCM018204.1:91529288..91529487 -
D5_03chromosomeD5_03:11275373..11275574 +
KI_03chromosomeKI_03:35591361..35591574 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:119957585..119957784 -
D10_03chromosomeD10_03:11353820..11354036 +
CM016616.1chromosomeCM016616.1:19881975..19882170 +
Dt_chr5chromosomeDt_chr5:21883764..21883981 +
At_chr5chromosomeAt_chr5:40610277..40610476 -
D02chromosomeD02:56610667..56610880 -
A03chromosomeA03:85861268..85861467 -
Ghir_D02chromosomeGhir_D02:58437378..58437593 -
Ghir_A03chromosomeGhir_A03:97957599..97957798 -
D02chromosomeD02:58871661..58871874 -
A03chromosomeA03:97051005..97051204 -
D02chromosomeD02:59865663..59865878 -
A03chromosomeA03:94981726..94981925 -
D02chromosomeD02:56870811..56871026 -
A03chromosomeA03:90257008..90257205 -
Dt02chromosomeDt02:58983292..58983509 -
At03chromosomeAt03:87548956..87549155 -
scaffold6167supercontigscaffold6167:242..459 -
scaffold15035supercontigscaffold15035:26949..27148 -
Gbar_D02chromosomeGbar_D02:56416247..56416466 -
Gbar_A03chromosomeGbar_A03:90711039..90711238 -
D02chromosomeD02:57734425..57734644 -
A03chromosomeA03:92917528..92917727 -
CM017624.1chromosomeCM017624.1:58746520..58746737 -
CM017612.1chromosomeCM017612.1:92746075..92746274 -
CM017650.1chromosomeCM017650.1:60223241..60223474 -
CM017638.1chromosomeCM017638.1:98950956..98951155 -
CM017702.1chromosomeCM017702.1:57347756..57347975 -
CM017690.1chromosomeCM017690.1:93174556..93174755 -
D02chromosomeD02:60808852..60809065 -
A03chromosomeA03:98555384..98555583 -
Chr03chromosomeChr03:15523561..15523760 +
Chr03chromosomeChr03:15660504..15660703 +
Chr03chromosomeChr03:51971123..51971324 -
B_03chromosomeB_03:14704098..14704299 +
Chr05chromosomeChr05:54740149..54740354 -
chr05chromosomechr05:40948659..40948991 -
Chr_05chromosomeChr_05:35729204..35729537 -
Chr05chromosomeChr05:56371370..56371585 -
Chr05chromosomeChr05:36090070..36090275 -
Chr05chromosomeChr05:30627609..30627810 -
Chr05chromosomeChr05:37489542..37489743 -
E03chromosomeE03:106526079..106526276 -
F03chromosomeF03:96268620..96268817 -
Chr03chromosomeChr03:28193994..28194191 +
Chr05chromosomeBNL0244:1..422 .
Chr05:53000986..53001395 -
Chr5chromosomeBNL0244:1..422 .
Chr5:27703398..27703807 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0244_origBNL0244_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A08N/A136.7BNL244View
2Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A107.29BNL244View
3TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A57.52BNL0244View
4AD-genome wide Reference Map (2009)AD_ch03_At.03N/A137BNL0244View
5Yumian-1 x T586, RIL (2006)AD_ch14_Dt.02N/A36.1BNL0244View
6Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A89BNL0244View
7Yumian-1 x 7235, RIL (2015)AD_ch03_At.03N/A82.5BNL0244View
8TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A68.9BNL0244View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch03_At.03N/A31.4BNL0244View
10Monsanto SSR Bin Map, (2009)AD_ch14_Dt.02N/A61BNL0244View
11Yumian-1 x T586, RIL (2009)AD_ch14_Dt.02N/A54.7BNL0244/220tView
12CCRI-35 x Yumian-1, RIL (2017)AD_ch03_At.03N/A47.91BNL0244View
13TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A68.9BNL0244View
Sequence
>BNL0244 ID=BNL0244; Name=BNL0244; organism=Gossypium hirsutum; type=genetic_marker; length=214bp
AGATTGAAATGCAGCTTCGGAATCTCTGCACCGGTGCCTCCATTAGAGGT
CCTTCTGGTCAGTCACTTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTTCCGAAGTCTGAGTATTACAATATCCCAGACCCGGTAATGCTCTTTCT
TTTGAAATGAATTTTTGTTCTTTGTTTAATTTTGCTGGATTCTTGGGTTT
TGTGCTCTTCCAAA