CGR5196, CGR5196 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5196
Genbank IDGQ393315
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0280
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5196_F: GGTCCTTCATGGTTCCTTCA
Primer 2CGR5196_R: CAAACCCTCTTTCCCTCCTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A11chromosomeA11:11501496..11501660 +
D11chromosomeD11:10890669..10890821 -
CM018225.1chromosomeCM018225.1:10090042..10090194 -
CM018212.1chromosomeCM018212.1:11311439..11311591 -
D5_11chromosomeD5_11:55951065..55951223 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:112709110..112709268 +
D10_11chromosomeD10_11:9901455..9901625 -
CM016624.1chromosomeCM016624.1:15107603..15107761 -
Dt_chr7chromosomeDt_chr7:9399477..9399629 -
scaffold2744_A11supercontigscaffold2744_A11:23726..23890 +
D11chromosomeD11:10616299..10616451 -
Ghir_D11chromosomeGhir_D11:10532275..10532427 -
Ghir_A11chromosomeGhir_A11:11654344..11654508 -
D11chromosomeD11:10335488..10335640 -
A11chromosomeA11:11260206..11260370 -
D11chromosomeD11:10593187..10593339 -
A11chromosomeA11:11329933..11330097 -
D11chromosomeD11:10356050..10356202 -
A11chromosomeA11:11706482..11706646 -
At11chromosomeAt11:12162000..12162152 -
At11chromosomeAt11:12158568..12158720 -
scaffold17682supercontigscaffold17682:81188..81340 +
scaffold2424supercontigscaffold2424:815943..816095 -
scaffold2424supercontigscaffold2424:812511..812663 -
Gbar_D11chromosomeGbar_D11:10324365..10324517 -
Gbar_A11chromosomeGbar_A11:11186088..11186240 -
D11chromosomeD11:10276792..10276944 -
A11chromosomeA11:11344846..11344998 -
CM017633.1chromosomeCM017633.1:10283668..10283820 -
CM017620.1chromosomeCM017620.1:11522018..11522188 -
CM017659.1chromosomeCM017659.1:10572652..10572804 -
CM017646.1chromosomeCM017646.1:11628067..11628224 -
CM017711.1chromosomeCM017711.1:10349577..10349729 -
CM017698.1chromosomeCM017698.1:11551937..11552089 -
D11chromosomeD11:10755762..10755914 -
A11chromosomeA11:11845014..11845178 -
Chr11chromosomeChr11:11875196..11875360 -
Chr11chromosomeChr11:11602276..11602434 -
Chr11chromosomeChr11:53439460..53439618 +
B_11chromosomeB_11:11172399..11172569 -
Chr07chromosomeChr07:9940460..9940618 -
chr07chromosomechr07:8691160..8691330 -
Chr_07chromosomeChr_07:9046886..9047056 -
Chr07chromosomeChr07:10258349..10258501 -
Chr07chromosomeChr07:8104727..8104897 -
Chr07chromosomeChr07:7208639..7208809 -
Chr07chromosomeChr07:8271616..8271786 -
E11chromosomeE11:12443569..12443733 -
F11chromosomeF11:9821704..9821880 -
Chr11chromosomeChr11:170429384..170429554 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0280MONCS0280Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A87.3CGR5196View
2Monsanto SSR Bin Map, (2009)AD_ch11_At.11N/A41CGR5196View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch11_At.11N/A96.6CGR5196aView
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A103.9CGR5196bView
Sequence
>CGR5196 ID=CGR5196; Name=CGR5196; organism=Gossypium hirsutum; type=genetic_marker; length=166bp
GGTCCTTCATGGTTCCTTCACTGAACGTGTGAATGAAATGAGATAGTGAA
CTGAGCGAGAGCGAGAGCGAGAGCGAGAAAACAGATGTGAGGGAGAATAT
GGGAATTAGGCAGTNGAAAACAATGAGATTTTGGCGGCAACAAGATGAGG
AGGGAAAGAGGGTTTG