CGR5506, CGR5506 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5506
Genbank IDGQ393516
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0481
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5506_F: CAGCAACCACAATTCGATCA
Primer 2CGR5506_R: GAAGTTGCTGTTGGGAAGGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:54620922..54621117 +
D05chromosomeD05:47891843..47892008 -
CM018206.1chromosomeCM018206.1:62575508..62575673 +
CM018219.1chromosomeCM018219.1:47306613..47306778 -
D5_05chromosomeD5_05:43419318..43419477 -
KI_05chromosomeKI_05:32455682..32455847 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:76832112..76832283 +
D10_05chromosomeD10_05:15339019..15339178 +
CM016618.1chromosomeCM016618.1:26262378..26262543 +
At_chr3chromosomeAt_chr3:1227831..1228014 +
Dt_chr9chromosomeDt_chr9:22332214..22332379 -
A05chromosomeA05:49494566..49494761 +
D05chromosomeD05:46703655..46703820 -
Ghir_D05chromosomeGhir_D05:47663183..47663348 -
Ghir_A05chromosomeGhir_A05:67092319..67092514 -
A05chromosomeA05:68697847..68698042 +
D05chromosomeD05:48748423..48748588 -
A05chromosomeA05:67478061..67478244 +
D05chromosomeD05:49424885..49425050 -
A05chromosomeA05:66447764..66447959 +
D05chromosomeD05:48178754..48178919 -
At05chromosomeAt05:48940449..48940614 +
Dt05chromosomeDt05:49846179..49846344 -
scaffold5512supercontigscaffold5512:215573..215738 +
scaffold9167supercontigscaffold9167:208385..208550 -
Gbar_D05chromosomeGbar_D05:44952620..44952785 +
Gbar_A05chromosomeGbar_A05:63090822..63090987 +
A05chromosomeA05:65595912..65596077 +
D05chromosomeD05:49614957..49615122 -
CM017614.1chromosomeCM017614.1:64553905..64554070 +
CM017627.1chromosomeCM017627.1:48554845..48555010 -
CM017640.1chromosomeCM017640.1:68435845..68436001 +
CM017653.1chromosomeCM017653.1:49682995..49683166 -
CM017692.1chromosomeCM017692.1:64651278..64651443 +
CM017705.1chromosomeCM017705.1:48844664..48844829 -
A05chromosomeA05:69139497..69139692 +
D05chromosomeD05:50191960..50192125 -
Chr05chromosomeChr05:69333655..69333820 +
Chr05chromosomeChr05:44186408..44186567 -
B_05chromosomeB_05:27326267..27326432 +
Chr09chromosomeChr09:44412352..44412511 -
chr09chromosomechr09:36159869..36160037 -
Chr_09chromosomeChr_09:35064203..35064362 -
Chr09chromosomeChr09:47462694..47462853 -
Chr09chromosomeChr09:32578210..32578375 -
Chr09chromosomeChr09:28452770..28452926 -
Chr09chromosomeChr09:33573077..33573233 -
E05chromosomeE05:79130222..79130375 -
F05chromosomeF05:56315075..56315249 +
Chr05chromosomeChr05:33972309..33972468 +
Chr09chromosomeCGR5506:1..595 .
Chr09:43771487..43772330 -
scaffold222supercontigCGR5506:1..595 .
scaffold222:160748..161591 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0481MONCS0481Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A35.9CGR5506View
20-153 x sGK9708, RIL (2016)AD_ch05_At.05N/A93.5CGR5506View
3GX1135 x VGX100-2, RIL (2016)AD_ch16_Dt.07N/A119.7CGR5506View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A181.7CGR5506View
5901-001 x sGK156, F2 (2019)AD_ch05_At.05N/A1.67CGR5506View
6Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A41CGR5506View
7(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A78.5MON_CGR5506View
8MGG-293-793, MAGIC (2018)AD_ch02_At.02N/A179.8CGR5506View
9MGG-293-793, MAGIC (2018)AD_ch05_At.05N/A179.8CGR5506View
Sequence
>CGR5506 ID=CGR5506; Name=CGR5506; organism=Gossypium hirsutum; type=genetic_marker; length=166bp
CAGCAACCACAATTCGATCAACAGCAACAACCACAACAGCAGCAGCAGCA
GCAGCAGCAGCAGTTCTTGCATGCTGCTGGTGCCCCGCATTACATTCATC
ATCACCAGTCTGGGGCAGTGCCGATCTCAGCTTATTATCCTGTATATCCT
TCCCAACAGCAACTTC