CGR5165, CGR5165 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5165
Genbank IDGQ393291
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0256
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5165_F: GGTTGAGGACGTCAAGGAAA
Primer 2CGR5165_R: GCTCTTCTTCTCGCTTCTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:37712037..37712399 +
A08chromosomeA08:76518734..76519097 +
A08chromosomeA08:76490024..76490390 +
CM018222.1chromosomeCM018222.1:36236295..36236661 +
CM018209.1chromosomeCM018209.1:80359026..80359395 -
D5_08chromosomeD5_08:32429136..32429486 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:77252472..77252858 +
D10_08chromosomeD10_08:40970970..40971341 +
CM016621.1chromosomeCM016621.1:66059325..66059688 -
At_chr4chromosomeAt_chr4:78433192..78433558 +
Dt_chr4chromosomeDt_chr4:3902158..3902520 -
D08chromosomeD08:35298710..35299072 +
A08chromosomeA08:59644688..59645054 +
Scaffold2890supercontigScaffold2890:30807..31173 +
Ghir_D08chromosomeGhir_D08:38206597..38206959 +
D08chromosomeD08:39281306..39281668 +
A08chromosomeA08:87163485..87163851 -
D08chromosomeD08:37979583..37979945 +
A08chromosomeA08:86596074..86596440 -
D08chromosomeD08:35989550..35989912 +
A08chromosomeA08:84048586..84048956 -
Dt08chromosomeDt08:34969537..34969903 +
scaffold4071supercontigscaffold4071:105779..106145 +
scaffold16642supercontigscaffold16642:50666..51035 -
Gbar_D08chromosomeGbar_D08:36165327..36165693 +
Gbar_A08chromosomeGbar_A08:81265267..81265636 -
D08chromosomeD08:37809577..37809943 +
A08chromosomeA08:82333006..82333375 -
CM017630.1chromosomeCM017630.1:37167884..37168250 +
CM017617.1chromosomeCM017617.1:81321580..81321949 -
CM017656.1chromosomeCM017656.1:38775965..38776336 +
CM017643.1chromosomeCM017643.1:90355844..90356211 -
CM017708.1chromosomeCM017708.1:36328276..36328653 +
CM017695.1chromosomeCM017695.1:82019727..82020096 -
D08chromosomeD08:38470312..38470674 +
A08chromosomeA08:88063199..88063565 -
Chr08chromosomeChr08:68236945..68237315 -
Chr08chromosomeChr08:77765351..77765737 +
Chr08chromosomeChr08:33062533..33062884 +
B_08chromosomeB_08:59816521..59816898 +
Chr04chromosomeChr04:34750144..34750513 +
Chr_04chromosomeChr_04:22819980..22820553 +
Chr04chromosomeChr04:36674018..36674391 +
Chr04chromosomeChr04:22452519..22452816 +
Chr04chromosomeChr04:18512385..18512745 +
E08chromosomeE08:70639199..70639534 +
F08chromosomeF08:61215754..61216131 +
Chr08chromosomeChr08:94968249..94968638 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0256MONCS0256Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A69.7CGR5165View
2W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A26.1CGR5165View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A57.7CGR5165View
4LMY28 x XLZ24, RIL (2018)AD_ch08_At.08N/A10.19CGR5165View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A21.4MON_CGR5165View
Sequence
>CGR5165 ID=CGR5165; Name=CGR5165; organism=Gossypium hirsutum; type=genetic_marker; length=136bp
GGTTGAGGACGTCAAGGAAATTGAGATAGAAGATGACGAGGAGGAGGAGG
AGGAGGAGGAGGATGACGATGATAAGGAAGATAGTGCTCAGGGTGCTAAT
GCCAGTTCAAAGCAAAGCAGAAGCGAGAAGAAGAGC