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Marker Overview
Name | BNL2449 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL2449_orig
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Source Type | genomic |
Repeat Motif | (GA)16, (TC)16 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL2449_F: ATCTTTCAAACAACGGCAGC |
Primer 2 | BNL2449_R: CGATTCCGGACTCTTGATGT |
Polymorphism | P_ BNL2449 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch13_At.13 | N/A | 82.8 | BNL2449 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch13_At.13 | N/A | 119.53 | BNL2449 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch10_At.10 | N/A | 42.14 | BNL2449 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch13_At.13 | N/A | 90.17 | BNL2449 | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch13_At.13 | N/A | 68.57 | BNL2449 | View |
6 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch13_At.13 | N/A | 27.1 | BNL2449 | View |
7 | Yumian-1 x T586, F2:3 (2005) | AD_ch13_At.13 | N/A | 30.4 | BNL2449 | View |
8 | Yumian-1 x T586, F2:7 (2008) | AD_ch13_At.13 | N/A | 20 | BNL2449 | View |
9 | Acala-44 x Pima S-7, F2 (2004) | AD_chU | N/A | 4.8 | BNL2449 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch10_At.10 | N/A | 56 | BNL2449 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 188 | BNL2449 | View |
12 | Yumian-1 x T586, RIL (2006) | AD_ch13_At.13 | N/A | 38.2 | BNL2449 | View |
13 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch01_At.01 | N/A | 30.4 | BNL2449 | View |
14 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch13_At.13 | N/A | 30.4 | BNL2449 | View |
15 | PD6992 x SM3, F2:3 (2005) | AD_ch13_At.13 | N/A | 0 | BNL2449 | View |
16 | Yumian-1 x T586, RIL (2015) | AD_ch13_At.13 | N/A | 53.1 | BNL2449 | View |
17 | Yumian-1 x 7235, RIL (2015) | AD_ch13_At.13 | N/A | 45.8 | BNL2449 | View |
18 | TM-1 x 3-79, RIL (2014) | AD_ch13_At.13 | N/A | 65.3 | BNL2449 | View |
19 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch13_At.13 | N/A | 56.3 | BNL2449 | View |
20 | W10 x TM-1, F2:3 (2015) | AD_ch13_At.13 | N/A | 18.1 | BNL2449 | View |
21 | GX1135 x GX100-2, F2 (2013) | AD_ch13_At.13 | N/A | 102.6 | BNL2449 | View |
22 | GX1135 x GX100-2, RIL (2016) | AD_ch13_At.13 | N/A | 57.8 | BNL2449 | View |
23 | Emian-22 x 3-79, BC1 (2015) | AD_ch13_At.13 | N/A | 80.9 | BNL2449 | View |
24 | LMY28 x XLZ24, RIL (2018) | AD_ch13_At.13 | N/A | 104.85 | BNL2449 | View |
25 | Monsanto SSR Bin Map, (2009) | AD_ch13_At.13 | N/A | 81 | BNL2449 | View |
26 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch13_At.13 | N/A | 147 | BNL2449a | View |
27 | H18 x TM-1, F2 (2005) | AD_ch13_At.13 | N/A | 75.6 | BNL2449a | View |
28 | 0-153 x sGK9708, RIL (2016) | AD_ch13_At.13 | N/A | 33.8 | BNL2449a | View |
29 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch10_At.10 | N/A | 60.4 | BNL2449b | View |
30 | H18 x TM-1, F2 (2005) | AD_ch13_At.13 | N/A | 77.9 | BNL2449b | View |
31 | 0-153 x sGK9708, RIL (2016) | AD_ch13_At.13 | N/A | 31.4 | BNL2449b | View |
32 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 61.05 | BNL2449-140 | View |
33 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch13_At.13 | N/A | 33.2 | BNL2449-140 | View |
34 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 60.8 | BNL2449-140 | View |
35 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 76.4 | BNL2449-140 | View |
36 | Yumian-1 x T586, RIL (2009) | AD_ch13_At.13 | N/A | 25 | BNL2449/170t(C13) | View |
37 | TM-1 x 3-79, RIL (2012.v3) | AD_ch13_At.13 | N/A | 65.26 | BNL2449 | View |
Sequence
>BNL2449 ID=BNL2449; Name=BNL2449; organism=Gossypium hirsutum; type=genetic_marker; length=145bp ATCTTTCAAACAACGGCAGCGCATGGAGATATTAGATGAACCATAAGTGC GACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAATAACTA TGTACCCTCACACTTGATTAATCAAACATCAAGAGTCCGGAATCG
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