Gh083, Gh083 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh083
AliasGh83
Genbank IDDQ908025
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908025
Source Typegenomic
Repeat MotifTC(17)
Primer 1Gh083_F: GGTTTGATCAGTTTGATGATTTAGC
Primer 2Gh083_R: CCGCGGAATCGTCAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908025
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:26992080..26992208 +
scaffold_1179supercontigscaffold_1179:15211..15336 -
D05chromosomeD05:24324405..24324567 -
CM018206.1chromosomeCM018206.1:25926760..25926881 +
CM018219.1chromosomeCM018219.1:22960828..22960960 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:26531475..26531600 -
D10_05chromosomeD10_05:38711297..38711443 +
Dt_chr11chromosomeDt_chr11:4869830..4870056 +
At_chr9chromosomeAt_chr9:58201563..58201692 -
A05chromosomeA05:23885071..23885200 +
scaffold108533supercontigscaffold108533:125..254 -
D05chromosomeD05:23436176..23436336 -
Ghir_A05chromosomeGhir_A05:25833096..25833222 +
Ghir_D05chromosomeGhir_D05:23618894..23619054 -
A05chromosomeA05:25889726..25889855 +
D05chromosomeD05:23015949..23016091 -
A05chromosomeA05:26742827..26742956 +
D05chromosomeD05:23462127..23462289 -
A05chromosomeA05:25806382..25806511 +
D05chromosomeD05:23340798..23340966 -
At05chromosomeAt05:21145653..21145774 +
scaffold25078supercontigscaffold25078:91752..91873 +
Gbar_A05chromosomeGbar_A05:24692652..24692771 +
Gbar_D05chromosomeGbar_D05:23486206..23486338 -
A05chromosomeA05:26277450..26277571 +
D05chromosomeD05:23229971..23230105 -
CM017614.1chromosomeCM017614.1:26289872..26290023 +
CM017627.1chromosomeCM017627.1:23136086..23136244 -
CM017640.1chromosomeCM017640.1:26555757..26555909 +
CM017653.1chromosomeCM017653.1:23591054..23591190 -
CM017692.1chromosomeCM017692.1:25963166..25963297 +
CM017705.1chromosomeCM017705.1:23294859..23294993 -
A05chromosomeA05:27192068..27192195 +
D05chromosomeD05:23945907..23946069 -
Chr05chromosomeChr05:27695433..27695554 -
Chr05chromosomeChr05:26908089..26908214 -
chr09chromosomechr09:19763529..19763716 -
E05chromosomeE05:28953183..28953297 -
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908025DQ908025Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A154.55Gh083View
2TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A87.84Gh083View
3TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A114.3Gh083View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A15.6Gh083View
5TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch19_Dt.05N/A107.1Gh83View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A137.8Gh83View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A143.34Gh083View
8TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A114.31GH083View
9TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A105.6Gh83-135View
10TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A60.4Gh83-690View
Sequence
>Gh083 ID=Gh083; Name=Gh083; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
GGTTTGATCAGTTTGATGATTTAGCTTAATTAGTTTCAAGTTTGATCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGGGGGAAAAAATTGCAG
CAAAACTTTACTGAAGTTGACGATTCCGCGG