CER0112, CER0112 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCER0112
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Source SequenceMONCS0116
Source TypeEST
PCR ConditionAnnealing temperature: 55
Primer 1CER0112_F: GTGGTGCCATCATCATCATC
Primer 2CER0112_R: TTGTTCCAAAAGCAACCATTA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:1579461..1579591 +
scaffold4169_D07supercontigscaffold4169_D07:160514..160644 +
Ghir_D07chromosomeGhir_D07:1589812..1589942 +
D07chromosomeD07:1517129..1517259 +
D07chromosomeD07:1561277..1561392 +
D07chromosomeD07:1477616..1477743 +
D07chromosomeD07:1609753..1609883 +
Chr01chromosomeCER0112:1..283 .
Chr01:1411441..1411705 +
scaffold62supercontigCER0112:1..283 .
scaffold62:1301630..1301894 -
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0116MONCS0116Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A40.1MON_CER0112View
2W10 x TM-1, F2:3 (2015)AD_ch16_Dt.07N/A0CER0112View
30-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A17.4CER0112View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A25.1CER0112View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A9.4CER0112View
Sequence
>CER0112 ID=CER0112; Name=CER0112; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
GTGGTGCCATCATCATCATCATCATCATCATCATCATCATCATCATCATC
ATCATCATCAAATCTTTGATATGTTGTTAACTACAAAGAAAACCTTGTTA
CTTGCTTAATTAATGGTTGCTTTTGGAACAA