CGR5452, CGR5452 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5452
Genbank IDGQ393484
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0449
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5452_F: ATCCCGGGAAAGTCACAGTT
Primer 2CGR5452_R: TATCGGCAACAATGGTGTTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393484
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:47256349..47256516 -
A12chromosomeA12:82160324..82160493 -
CM018226.1chromosomeCM018226.1:43952746..43952910 -
CM018213.1chromosomeCM018213.1:79147744..79147907 -
D5_12chromosomeD5_12:15681637..15681799 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:21892929..21893094 +
D10_12chromosomeD10_12:38930128..38930289 -
CM016625.1chromosomeCM016625.1:111761220..111761387 -
scaffold3451.1supercontigscaffold3451.1:39464..39633 +
Dt_chr8chromosomeDt_chr8:40714341..40714508 -
D12chromosomeD12:43419562..43419731 -
A12chromosomeA12:68395477..68395646 -
Ghir_D12chromosomeGhir_D12:46445477..46445644 -
Ghir_A12chromosomeGhir_A12:86877422..86877591 -
D12chromosomeD12:45536346..45536513 -
A12chromosomeA12:87796822..87796991 -
D12chromosomeD12:46418898..46419065 -
A12chromosomeA12:84973359..84973528 -
D12chromosomeD12:44282776..44282940 -
A12chromosomeA12:82120680..82120849 -
Dt12chromosomeDt12:45508198..45508362 -
scaffold3102supercontigscaffold3102:119298..119462 -
Gbar_D12chromosomeGbar_D12:43240593..43240757 -
Gbar_A12chromosomeGbar_A12:81602529..81602692 -
D12chromosomeD12:44451065..44451229 -
A12chromosomeA12:81086727..81086890 -
CM017621.1chromosomeCM017621.1:82172002..82172165 +
CM017634.1chromosomeCM017634.1:44433351..44433514 -
CM017660.1chromosomeCM017660.1:46932836..46932999 -
CM017647.1chromosomeCM017647.1:85737348..85737511 -
CM017712.1chromosomeCM017712.1:45050565..45050729 -
CM017699.1chromosomeCM017699.1:81513401..81513564 -
D12chromosomeD12:46413340..46413507 -
A12chromosomeA12:88342965..88343134 -
Chr12chromosomeChr12:88291248..88291411 -
Chr12chromosomeChr12:95519491..95519656 -
Chr12chromosomeChr12:42109349..42109512 -
B_12chromosomeB_12:68813556..68813717 -
Chr08chromosomeChr08:42393049..42393218 -
chr08chromosomechr08:32636590..32636759 -
Chr08chromosomeChr08:43514664..43514829 -
Chr08chromosomeChr08:23419951..23420116 -
Chr08chromosomeChr08:28702923..28703186 -
E12chromosomeE12:91939123..91939298 -
F12chromosomeF12:72989751..72989914 -
Chr12chromosomeChr12:22118916..22119081 +
Chr08chromosomeCGR5452:16..587 .
Chr08:41595362..41596008 -
Chr8chromosomeCGR5452:16..587 .
Chr8:29185111..29185757 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0449MONCS0449Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Baimian 1 x TM-1 , F2:3 (2014)AD_ch26_Dt.12N/A0CGR5452View
2GX1135 x GX100-2, F2 (2013)AD_ch26_Dt.12N/A64.6CGR5452View
3GX1135 x GX100-2, RIL (2015)AD_ch26_Dt.12N/A83.1CGR5452View
4GX1135 x GX100-2, RIL (2016)AD_ch26_Dt.12N/A83.1CGR5452View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A87.3CGR5452View
6Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A41CGR5452View
7(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A36MON_CGR5452View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A82.23CGR5452View
Sequence
>CGR5452 ID=CGR5452; Name=CGR5452; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
ATCCCGGGAAAGTCACAGTTTTGAATACAGCCGAAGTACCAAGAATTTTT
AATATTACTACGCCGGGTTACTTTTGAGGCCGGTTGTTACGTTGTTGATT
TGGTCACAGCTCTCTCTCTCTCTCTCTCTCTCTTTCCTGTTGATTTATAA
AAACACCATTGTTGCCGATA