CGR5282, CGR5282 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5282
Genbank IDGQ393393
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0358
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5282_F: AGGCTCCTTATGACGTGGG
Primer 2CGR5282_R: ACCTCCTTCCCTCACACCTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:62385186..62385341 +
A01chromosomeA01:101839155..101839309 +
CM018215.1chromosomeCM018215.1:60839544..60839687 +
D5_01chromosomeD5_01:54740318..54740458 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97368768..97368913 +
D10_01chromosomeD10_01:1813696..1813845 -
CM016614.1chromosomeCM016614.1:134965344..134965484 +
Dt_chr9chromosomeDt_chr9:51146556..51146711 -
D01chromosomeD01:59511803..59511958 +
A01chromosomeA01:97875799..97875953 +
Ghir_D01chromosomeGhir_D01:61230935..61231090 +
D01chromosomeD01:62707325..62707480 +
A01chromosomeA01:116020694..116020848 +
D01chromosomeD01:62667458..62667613 +
A01chromosomeA01:113859777..113859931 +
D01chromosomeD01:59440692..59440847 +
A01chromosomeA01:110651434..110651585 +
Dt01chromosomeDt01:60849477..60849620 +
scaffold11279supercontigscaffold11279:33348..33491 +
Gbar_D01chromosomeGbar_D01:61088422..61088565 +
D01chromosomeD01:61729903..61730046 +
CM017623.1chromosomeCM017623.1:62043224..62043373 +
CM017610.1chromosomeCM017610.1:112065774..112065913 +
CM017649.1chromosomeCM017649.1:63512592..63512741 +
CM017636.1chromosomeCM017636.1:119610667..119610818 +
CM017701.1chromosomeCM017701.1:61503409..61503552 +
D01chromosomeD01:63130948..63131103 +
A01chromosomeA01:117508371..117508525 +
Chr02chromosomeChr02:2071973..2072118 -
Chr01chromosomeChr01:50546890..50547030 +
B_01chromosomeB_01:96049386..96049530 +
Chr02chromosomeChr02:59451162..59451302 +
chr02chromosomechr02:45661454..45661594 +
Chr_02chromosomeChr_02:40415693..40415836 +
Chr02chromosomeChr02:44091138..44091278 +
Chr02chromosomeChr02:42572995..42573135 +
E01chromosomeE01:114561242..114561414 +
F01chromosomeF01:96580727..96580870 +
Chr01chromosomeChr01:2303388..2303537 -
Chr02chromosomeCGR5282:2..359 .
Chr02:60892931..60893273 +
scaffold294supercontigCGR5282:2..359 .
scaffold294:245329..245671 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0358MONCS0358Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A41.5CGR5282View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A37.2CGR5282View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A63.7CGR5282View
4Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A0CGR5282View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A109.9MON_CGR5282View
6DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A135.57MON_CGR5282View
7DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A135.57MON_CGR5282View
8DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A7.1MON_CGR5282View
9DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A7.1MON_CGR5282View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A79.58CGR5282View
11MGG-293-793, MAGIC (2018)AD_ch01_At.01N/A3.9CGR5282cView
12MGG-293-793, MAGIC (2018)AD_ch01_At.01N/A8.9CGR5282bView
13MGG-293-793, MAGIC (2018)AD_ch15_Dt.01N/A163.9CGR5282aView
Sequence
>CGR5282 ID=CGR5282; Name=CGR5282; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
AGGCTCCTTATGACGTGGGGATTTTGGGTGGGATGGGTTTTTGGAGTAAA
CTATTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTTA
CATTTATCGCTGCTAAAATGTAAACCTTTATTGTGTAAGGTGTGAGGGAA
GGAGGT