CGR5276, CGR5276 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5276
Genbank IDGQ393387
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0352
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5276_F: ATTCCATCTCCAACCACAGC
Primer 2CGR5276_R: AACACGCTTTCCAGCTCTTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:22727155..22727308 +
A05chromosomeA05:24808381..24808546 +
CM018219.1chromosomeCM018219.1:21552833..21552986 +
CM018206.1chromosomeCM018206.1:23807662..23807827 +
D5_05chromosomeD5_05:20230635..20230791 +
KI_05chromosomeKI_05:18081921..18082080 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:24500731..24500896 +
D10_05chromosomeD10_05:40215106..40215256 -
CM016618.1chromosomeCM016618.1:87679972..87680119 -
At_chr9chromosomeAt_chr9:90295578..90295743 -
D05chromosomeD05:21784682..21784835 +
A05chromosomeA05:21777504..21777669 +
Ghir_D05chromosomeGhir_D05:22050500..22050653 +
Ghir_A05chromosomeGhir_A05:24374315..24374480 +
D05chromosomeD05:21520790..21520943 +
A05chromosomeA05:23662079..23662244 +
D05chromosomeD05:21889602..21889755 +
A05chromosomeA05:24419994..24420159 +
D05chromosomeD05:21771414..21771567 +
A05chromosomeA05:24573682..24573847 +
Dt05chromosomeDt05:22637001..22637154 +
Dt05chromosomeDt05:22633575..22633728 +
scaffold37319supercontigscaffold37319:97009..97162 +
scaffold37319supercontigscaffold37319:93583..93736 +
scaffold15553supercontigscaffold15553:97957..98122 -
scaffold15553supercontigscaffold15553:106164..106317 -
Gbar_D05chromosomeGbar_D05:21835516..21835669 +
Gbar_A05chromosomeGbar_A05:23522394..23522559 +
D05chromosomeD05:21805060..21805216 +
A05chromosomeA05:24195376..24195541 +
CM017627.1chromosomeCM017627.1:21709765..21709921 +
CM017614.1chromosomeCM017614.1:24024946..24025114 +
CM017653.1chromosomeCM017653.1:22098236..22098389 +
CM017640.1chromosomeCM017640.1:24372569..24372734 +
CM017705.1chromosomeCM017705.1:21761199..21761358 +
CM017692.1chromosomeCM017692.1:23731754..23731919 +
D05chromosomeD05:22380926..22381079 +
A05chromosomeA05:24807852..24808017 +
Chr05chromosomeChr05:26092048..26092213 +
Chr05chromosomeChr05:24422737..24422902 +
Chr05chromosomeChr05:20320594..20320750 +
B_05chromosomeB_05:62137062..62137224 -
Chr09chromosomeChr09:20789975..20790128 +
chr09chromosomechr09:18620147..18620303 +
Chr09_5135686chromosomeChr09_5135686:4992..5154 -
Chr09chromosomeChr09:21459099..21459255 +
Chr09chromosomeChr09:17528103..17528274 +
Chr09chromosomeChr09:15382655..15382817 +
Chr09chromosomeChr09:17903923..17904094 +
E05chromosomeE05:26461666..26461825 +
F05chromosomeF05:20869383..20869551 +
Chr05chromosomeChr05:104890641..104890788 -
Chr09chromosomeCGR5276:1..529 .
Chr09:20159661..20160180 +
Chr9chromosomeCGR5276:1..529 .
Chr9:28681790..28682309 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0352MONCS0352Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch19_Dt.05N/A76.5CGR5276View
2W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A32.2CGR5276View
3Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A141CGR5276View
Sequence
>CGR5276 ID=CGR5276; Name=CGR5276; organism=Gossypium hirsutum; type=genetic_marker; length=166bp
ATTCCATCTCCAACCACAGCGTTAATGGGGACATCATTGAAGAAGAAGAA
GAAGATGATGATGATGATAATGATGATGATGATGAAGATGACCTGGCCAA
GGCTTTCGAGGTGTTCGACTTGAACGGGGATGGGTTCATTTCATGCGAAG
AGCTGGAAAGCGTGTT