CGR5217, CGR5217 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5217
Genbank IDGQ393334
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0299
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5217_F: CGAAATCCAAACACAAGAAC
Primer 2CGR5217_R: ACGCCTTGGTTTGCTTCTAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:5001459..5001621 -
CM018225.1chromosomeCM018225.1:4654331..4654495 -
D5_11chromosomeD5_11:61292472..61292626 +
D10_11chromosomeD10_11:4602686..4602832 -
CM016624.1chromosomeCM016624.1:6302362..6302516 -
At_chr1chromosomeAt_chr1:85258788..85258950 +
Dt_chr7chromosomeDt_chr7:3102792..3102954 -
D11chromosomeD11:5002447..5002609 -
Ghir_D11chromosomeGhir_D11:4915080..4915234 -
Ghir_A11chromosomeGhir_A11:5292546..5292691 -
D11chromosomeD11:4840615..4840777 -
A11chromosomeA11:5061902..5062290 -
D11chromosomeD11:4961976..4962138 -
D11chromosomeD11:4866266..4866424 -
Dt11chromosomeDt11:6028012..6028174 -
scaffold25826supercontigscaffold25826:38772..38916 +
scaffold7496supercontigscaffold7496:31173..31335 -
Gbar_D11chromosomeGbar_D11:4740677..4740839 -
Gbar_A11chromosomeGbar_A11:4926870..4927013 -
D11chromosomeD11:4760229..4760393 -
A11chromosomeA11:5169529..5169918 -
CM017633.1chromosomeCM017633.1:4685740..4685904 -
CM017659.1chromosomeCM017659.1:4870608..4870808 -
CM017711.1chromosomeCM017711.1:4760302..4760456 -
D11chromosomeD11:5005423..5005585 -
Chr11chromosomeChr11:58777884..58778032 +
B_11chromosomeB_11:5092170..5092322 -
Chr07chromosomeChr07:4557642..4557782 -
chr07chromosomechr07:4184612..4184760 -
Chr_07chromosomeChr_07:4359652..4359798 -
Chr07chromosomeChr07:4747476..4747618 -
Chr07chromosomeChr07:3770668..3770891 -
Chr07chromosomeChr07:4016979..4017120 -
E11chromosomeE11:5745086..5745226 -
F11chromosomeF11:4425281..4425439 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0299MONCS0299Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A109.8CGR5217View
2GX1135 x GX100-2, RIL (2015)AD_ch21_Dt.11N/A254.7CGR5217View
3GX1135 x GX100-2, RIL (2016)AD_ch21_Dt.11N/A254.7CGR5217View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch21_Dt.11N/A59.7CGR5217View
5Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A21CGR5217View
6DH962 X Ji Mian 5, F2 (2015)AD_ch21_Dt.11N/A40.73MON_CGR5217View
7DH962 x Ji Mian 5, RIL (2015)AD_ch21_Dt.11N/A26.7MON_CGR5217View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch21_Dt.11N/A18.34CGR5217View
9TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A32.2cgr5217-310View
Sequence
>CGR5217 ID=CGR5217; Name=CGR5217; organism=Gossypium hirsutum; type=genetic_marker; length=161bp
CGAAATCCAAACACAAGAACAACTAAATCATACTTAAAAAAGAGATACAG
TCATATAGAGATATAAGATAAGGGGAGGGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAAGATAATAGGAATAAAACAAAGAGGTAGAAGCA
AACCAAGGCGT