SWU00950, SWU00950 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00950
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CAAACT)3
Primer 1SWU00950_F: GGAGTCTTGGTGGGCTTA
Primer 2SWU00950_R: AAGTGTAGGCGGCATTGT
Product Length130
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:6808096..6808226 +
A01chromosomeA01:9089817..9089953 +
CM018215.1chromosomeCM018215.1:7102081..7102217 +
CM018202.1chromosomeCM018202.1:8281354..8281490 +
D5_01chromosomeD5_01:6659802..6659931 +
KI_01chromosomeKI_01:5250150..5250267 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9476126..9476262 +
D10_01chromosomeD10_01:53593784..53593914 -
CM016614.1chromosomeCM016614.1:10480524..10480653 +
At_chr2chromosomeAt_chr2:4984595..4984725 +
At_chr2chromosomeAt_chr2:8704017..8704153 +
scaffold38_A01supercontigscaffold38_A01:52301..52437 +
D01chromosomeD01:6361357..6361487 +
Ghir_D01chromosomeGhir_D01:7516622..7516752 +
Ghir_A01chromosomeGhir_A01:8277306..8277442 +
D01chromosomeD01:7351750..7351880 +
A01chromosomeA01:7943208..7943344 +
D01chromosomeD01:6980857..6980987 +
D01chromosomeD01:6948719..6948849 +
A01chromosomeA01:8432806..8432942 +
D01chromosomeD01:7409507..7409637 +
A01chromosomeA01:8245833..8245969 +
Gbar_D01chromosomeGbar_D01:7833256..7833392 +
Gbar_A01chromosomeGbar_A01:8319013..8319149 +
D01chromosomeD01:7554360..7554496 +
A01chromosomeA01:7976370..7976506 +
CM017623.1chromosomeCM017623.1:7280799..7280929 +
CM017610.1chromosomeCM017610.1:9282644..9282780 +
CM017649.1chromosomeCM017649.1:8107034..8107164 +
CM017636.1chromosomeCM017636.1:8454299..8454435 +
CM017701.1chromosomeCM017701.1:7467670..7467800 +
CM017688.1chromosomeCM017688.1:8457398..8457534 +
D01chromosomeD01:7635330..7635460 +
A01chromosomeA01:8441695..8441831 +
Chr01chromosomeChr01:8419857..8419993 +
Chr01chromosomeChr01:9286296..9286432 +
Chr01chromosomeChr01:6648836..6648966 +
B_01chromosomeB_01:8661301..8661431 +
Chr02chromosomeChr02:7187732..7187862 +
chr02chromosomechr02:7144399..7144688 +
Chr_02chromosomeChr_02:6665890..6666020 +
Chr02chromosomeChr02:7412760..7412890 +
Chr02chromosomeChr02:5689173..5689291 +
Chr02chromosomeChr02:7465280..7465410 +
E01chromosomeE01:9913611..9913735 +
F01chromosomeF01:7330039..7330169 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A133.8SWU00950View
2Yumian-1 x 7235, RIL (2015)AD_ch20_Dt.10N/A127.9SWU0950View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A43.5SWU0950View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A10.05SWU00950View
Sequence
>SWU00950 ID=SWU00950; Name=SWU00950; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
GGAGTCTTGGTGGGCTTAGCTCGGTGCCTGXAGCTGGTACCGAGTGGACA
AACTCAAACTCAAACTCAGAGTCAGGGGATACTAGTTATGGAAATAGTAA
CGTATATGTCAGCACAATGCCGCCTACACTT