PGML4051, PGML4051 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML4051
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AGC)5
Primer 1PGML4051_F: ATTCAGAGAGAACCGCCAGA
Primer 2PGML4051_R: CGGAGATTATATTGCCGGTG
Product Length194
Publication[view all]
CommentBAC_ID=FITC48588.b1
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:9270953..9271145 -
A05chromosomeA05:10087271..10087469 -
CM018219.1chromosomeCM018219.1:8636468..8636660 -
CM018206.1chromosomeCM018206.1:9916423..9916615 -
D5_05chromosomeD5_05:8225170..8225363 -
KI_05chromosomeKI_05:7480267..7480466 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:10015776..10015967 -
D10_05chromosomeD10_05:52272600..52272794 +
CM016626.1chromosomeCM016626.1:14259467..14259666 -
At_chr9chromosomeAt_chr9:46845284..46845482 +
Dt_chr9chromosomeDt_chr9:59751207..59751399 -
D05chromosomeD05:8641688..8641880 -
A05chromosomeA05:9301858..9302056 -
Ghir_D05chromosomeGhir_D05:9105080..9105272 -
Ghir_A05chromosomeGhir_A05:9997838..9998036 -
D05chromosomeD05:8881137..8881329 -
A05chromosomeA05:9735806..9736004 -
D05chromosomeD05:9037048..9037240 -
A05chromosomeA05:10032603..10032801 -
D05chromosomeD05:8875753..8875945 -
A05chromosomeA05:10414266..10414458 -
Gbar_D05chromosomeGbar_D05:9007924..9008116 -
Gbar_A05chromosomeGbar_A05:9561020..9561212 -
D05chromosomeD05:9091164..9091356 -
A05chromosomeA05:10127648..10127840 -
CM017627.1chromosomeCM017627.1:8975118..8975310 -
CM017614.1chromosomeCM017614.1:9968170..9968362 -
CM017653.1chromosomeCM017653.1:9240827..9241019 -
CM017640.1chromosomeCM017640.1:10113643..10113835 -
CM017705.1chromosomeCM017705.1:8930264..8930456 -
CM017692.1chromosomeCM017692.1:9870894..9871086 -
D05chromosomeD05:9147101..9147293 -
A05chromosomeA05:10210293..10210491 -
Chr05chromosomeChr05:10736111..10736302 -
Chr05chromosomeChr05:9854436..9854628 -
Chr05chromosomeChr05:8260921..8261114 -
B_05chromosomeB_05:76232666..76232862 +
Chr09chromosomeChr09:8531639..8531831 -
chr09chromosomechr09:7903880..7904073 -
Chr_09chromosomeChr_09:7800365..7800558 -
Chr09chromosomeChr09:8845163..8845354 -
Chr09chromosomeChr09:7824769..7824963 -
Chr09chromosomeChr09:6529532..6529725 -
Chr09chromosomeChr09:7619033..7619226 -
E05chromosomeE05:10660217..10660422 -
F05chromosomeF05:8642951..8643153 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A26.7PGML4051View
2Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A22.6PGML4051View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A74.3PGML4051View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A66.52PGML4051View
Sequence
>PGML4051 ID=PGML4051; Name=PGML4051; organism=Gossypium raimondii; type=genetic_marker; length=194bp
ATTCAGAGAGAACCGCCAGATATATACCTCATAATCATATATATAAAAGA
GCTATTAAAAGAAGAAAAGGAAAAGAATAAAATCAGTAAAACGTAAATAA
ATAAAAAAACTATACGTTAGTTGTGGTAGCAGCAGCAGCAGCGGTGGTGG
CAGTAGCAACATTAGCAGCAGTTCCACCGGCAATATAATCTCCG