PGML1637, PGML1637 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1637
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAT)5
Primer 1PGML1637_F: GGAACAGTACTCGTTTCCCAA
Primer 2PGML1637_R: ACAGCTTGCCAATCTTCCAT
Product Length202
Publication[view all]
CommentBAC_ID=FITC84489.b1
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:57335573..57335777 -
A12chromosomeA12:96227913..96228111 -
CM018226.1chromosomeCM018226.1:53866799..53867000 -
CM018213.1chromosomeCM018213.1:93083985..93084192 -
D5_12chromosomeD5_12:5821888..5822089 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:6669638..6669845 +
D10_12chromosomeD10_12:48888185..48888389 -
CM016625.1chromosomeCM016625.1:8278088..8278277 +
Dt_chr8chromosomeDt_chr8:49463200..49463401 +
D12chromosomeD12:53843411..53843615 -
A12chromosomeA12:81617591..81617789 -
Ghir_D12chromosomeGhir_D12:56276003..56276207 -
Ghir_D12chromosomeGhir_D12:56256800..56257003 -
Ghir_A12chromosomeGhir_A12:100871972..100872170 -
D12chromosomeD12:55573141..55573345 -
A12chromosomeA12:101172859..101173057 -
D12chromosomeD12:56355326..56355527 -
A12chromosomeA12:99024622..99024820 -
D12chromosomeD12:54525857..54526058 -
A12chromosomeA12:95939466..95939664 -
Gbar_D12chromosomeGbar_D12:52877685..52877886 -
Gbar_A12chromosomeGbar_A12:95827610..95827817 -
D12chromosomeD12:54667713..54667914 -
A12chromosomeA12:95063508..95063715 -
CM017634.1chromosomeCM017634.1:54599033..54599234 -
CM017621.1chromosomeCM017621.1:96244239..96244443 -
CM017660.1chromosomeCM017660.1:57501952..57502153 -
CM017647.1chromosomeCM017647.1:99891405..99891612 -
CM017712.1chromosomeCM017712.1:55187624..55187825 -
CM017699.1chromosomeCM017699.1:95425395..95425602 -
D12chromosomeD12:56713090..56713294 -
A12chromosomeA12:102552558..102552756 -
Chr12chromosomeChr12:110602896..110603103 -
Chr12chromosomeChr12:51917639..51917840 -
B_12chromosomeB_12:81910393..81910593 -
chr08chromosomechr08:40428243..40428444 -
Chr08_5130163chromosomeChr08_5130163:3963..4145 +
Chr08chromosomeChr08:53867365..53867581 -
Chr08chromosomeChr08:29252940..29253135 -
Chr08_6370232chromosomeChr08_6370232:115..307 -
E12chromosomeE12:107170862..107171064 -
F12chromosomeF12:85547403..85547607 -
Chr12chromosomeChr12:164623752..164623956 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A80.1PGML1637View
2Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A62.3PGML1637View
3GX1135 x GX100-2, RIL (2015)AD_ch26_Dt.12N/A10.2PGML1637View
4GX1135 x GX100-2, RIL (2016)AD_ch26_Dt.12N/A10.2PGML1637View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A53PGML1637View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A118.19PGML1637View
Sequence
>PGML1637 ID=PGML1637; Name=PGML1637; organism=Gossypium raimondii; type=genetic_marker; length=202bp
GGAACAGTACTCGTTTCCCAATAAATTACAAAGAACGAATAATTATATGG
ATTAAACAAGAGATAATAATAATAATAATGGTGGAGATAAAGCATATTGA
ATGGAGCCAAAAGAGTCCAGATATAGGAGGGAAAGCATATGAAAAATGCA
AAGCCTGGGATAGAGACTAGAGACAATATTATATGGAAGATTGGCAAGCT
GT