g.raimondii_cottongen_reftransV1_0001237, g.raimondii_cottongen_reftransV1_0001237 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001237
Unique Nameg.raimondii_cottongen_reftransV1_0001237
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length2285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.raimondii_cottongen_reftransV1_0001237:1..2285 .
Chr12:14840407..14844985 +
Homology
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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2V3M5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G086900 PE=4 SV=1)

HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1 
Query:  136 ICKMESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            ICKMESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP
Sbjct:   20 ICKMESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 325
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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2VWV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G086900 PE=4 SV=1)

HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP
Sbjct:    1 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 303
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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2RZL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G086900 PE=4 SV=1)

HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 301/303 (99.34%), Postives = 301/303 (99.34%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFE  SFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP
Sbjct:    1 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEVTSFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 303
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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2V3L8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G086900 PE=4 SV=1)

HSP 1 Score: 558.14 bits (1437), Expect = 0.000e+0
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPET 1014
            MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPE 
Sbjct:    1 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDINNNSNTNSNNNENNNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPEA 290
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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A061ED00_THECC (DCD domain protein isoform 1 OS=Theobroma cacao GN=TCM_017191 PE=4 SV=1)

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 276/304 (90.79%), Postives = 291/304 (95.72%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXX-DKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            MES+NSFWQLGDDLRGQSK SEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAE+RTRDKFGF EDNKFENLNFNMLNLDSKIGD+ SKS+FRN IYN +AVYQKNNS+++GNL+ NKYSGNNH NKD+NNNSNTN+NN+  N+  N A DKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRK+CKALEEDAFRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGSP
Sbjct:    1 MESINSFWQLGDDLRGQSKVSEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEIRTRDKFGFQEDNKFENLNFNMLNLDSKIGDNASKSSFRNSIYNMNAVYQKNNSNSLGNLAGNKYSGNNHSNKDVNNNSNTNNNNSNENSNANNAADKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGSP 304
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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2SFN1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G073500 PE=4 SV=1)

HSP 1 Score: 530.02 bits (1364), Expect = 2.625e-180
Identity = 265/303 (87.46%), Postives = 288/303 (95.05%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            M SM+SFWQLGD LRGQSKASED+ WLMVASKLAEQTR KGER++NLDLSKGPAE+RTRDKFGF EDNKFENLNFNMLNLDSKIGD++SKS+FRNG YN +AVYQKNNS+++GNL+ NKYSGNNH +K +NNNS+T++NN+  N+ANNA DKRFKTLPA ETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAA+FGGSNIDPTAWEDKKCKGESRFPAQVRI IRK+CKALEEDAFRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGSP
Sbjct:    1 MGSMDSFWQLGDYLRGQSKASEDNHWLMVASKLAEQTRTKGERLSNLDLSKGPAEIRTRDKFGFREDNKFENLNFNMLNLDSKIGDNVSKSSFRNGTYNINAVYQKNNSNSLGNLAGNKYSGNNHSSKYVNNNSSTSNNNSNENSANNAVDKRFKTLPAAETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAATFGGSNIDPTAWEDKKCKGESRFPAQVRICIRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGSP 303
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2TAL4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G073500 PE=4 SV=1)

HSP 1 Score: 528.48 bits (1360), Expect = 9.130e-180
Identity = 264/303 (87.13%), Postives = 288/303 (95.05%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            M SM+SFWQLGD LRGQSKASED+ WLMVASKLAEQTR KGER++NLDLSKGPAE+RTRDKFGF EDNKFENLNFNMLNLDSKIGD++SKS+FRNG YN +AVYQKNNS+++GNL+ NKYSGNNH +K +NNNS+T++NN+  N+ANNA DKRFKTLPA ETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAA+FGGSNIDPTAWEDKKCKGESRFPAQV+I IRK+CKALEEDAFRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGSP
Sbjct:    1 MGSMDSFWQLGDYLRGQSKASEDNHWLMVASKLAEQTRTKGERLSNLDLSKGPAEIRTRDKFGFREDNKFENLNFNMLNLDSKIGDNVSKSSFRNGTYNINAVYQKNNSNSLGNLAGNKYSGNNHSSKYVNNNSSTSNNNSNENSANNAVDKRFKTLPAAETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAATFGGSNIDPTAWEDKKCKGESRFPAQVKICIRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGSP 303
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2P4N1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G073500 PE=4 SV=1)

HSP 1 Score: 524.242 bits (1349), Expect = 4.230e-178
Identity = 263/303 (86.80%), Postives = 286/303 (94.39%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            M SM+SFWQLGD LRGQSKASED+ WLMVASKLAEQTR KGER++NLDLSKGPAE+RTRDKFGF EDNKFENLNFNMLNLDSKIGD++SKS+FRNG YN +AVYQKNNS+++GNL+ NKYSGNNH +K +NNNS+T++NN+  N+ANNA DKRFKTLPA ETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAA+FGGSNIDPTAWEDKKCKGESRFPAQVRI IRK+CKALEEDAFRPVLHHYDGPKFRLELSVPETLDL+DLCEQA  P
Sbjct:    1 MGSMDSFWQLGDYLRGQSKASEDNHWLMVASKLAEQTRTKGERLSNLDLSKGPAEIRTRDKFGFREDNKFENLNFNMLNLDSKIGDNVSKSSFRNGTYNINAVYQKNNSNSLGNLAGNKYSGNNHSSKYVNNNSSTSNNNSNENSANNAVDKRFKTLPAAETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAATFGGSNIDPTAWEDKKCKGESRFPAQVRICIRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLLDLCEQADFP 303
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0D2S8M6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G073500 PE=4 SV=1)

HSP 1 Score: 520.776 bits (1340), Expect = 1.653e-176
Identity = 265/316 (83.86%), Postives = 288/316 (91.14%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFG-------------LPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGSP 1053
            M SM+SFWQLGD LRGQSKASED+ WLMVASKLAEQTR KGER++NLDLSKGPAE+RTRDKFGF EDNKFENLNFNMLNLDSKIGD++SKS+FRNG YN +AVYQKNNS+++GNL+ NKYSGNNH +K +NNNS+T++NN+  N+ANNA DKRFKTLPA ETLPRNEVLGGYIFVCNNDTMQEDLKRQLFG             LPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAA+FGGSNIDPTAWEDKKCKGESRFPAQVRI IRK+CKALEEDAFRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGSP
Sbjct:    1 MGSMDSFWQLGDYLRGQSKASEDNHWLMVASKLAEQTRTKGERLSNLDLSKGPAEIRTRDKFGFREDNKFENLNFNMLNLDSKIGDNVSKSSFRNGTYNINAVYQKNNSNSLGNLAGNKYSGNNHSSKYVNNNSSTSNNNSNENSANNAVDKRFKTLPAAETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGGISYMLLFSHLIGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAATFGGSNIDPTAWEDKKCKGESRFPAQVRICIRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGSP 316
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: M5WTC6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009447mg PE=4 SV=1)

HSP 1 Score: 509.605 bits (1311), Expect = 1.812e-172
Identity = 245/302 (81.13%), Postives = 269/302 (89.07%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGS 1050
            M+SMNSFWQLGD+LRGQSK +ED KW M ASKLAEQTR+KGERMNNLDLSKGPAE R RDKFGF EDNKFE+LNFNML+LDSK+ +++SKS+FRNGIYN +AVYQKNN+  +GN++ NKYS                +N+N NN + N  +KRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIR+RK+CKALEEDAFRPVLHHYDGPKFRLELS+PETLDL+DLCEQAGS
Sbjct:    1 MDSMNSFWQLGDELRGQSKVAEDQKWFMAASKLAEQTRVKGERMNNLDLSKGPAETRARDKFGFQEDNKFESLNFNMLSLDSKVNENVSKSSFRNGIYNMNAVYQKNNASVVGNMTGNKYSNKEI------------NNSNINNESANTVEKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRVRKLCKALEEDAFRPVLHHYDGPKFRLELSIPETLDLLDLCEQAGS 290
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 6.041e-85
Identity = 120/150 (80.00%), Postives = 139/150 (92.67%), Query Frame = 1 
Query:  595 DKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQA 1044
            +KRFKTLP  E+LPRNE +GGYIFVCNNDTMQE+LKRQLFGLPPRYRDSVRAITPGLPLFLYNY+THQLHG+FEAASFGG+NIDPTAWEDKK +GESRFPAQVR+  RK+C+ LEED+FRP+LHHYDGPKFRLEL++PE + L+D+ E+ 
Sbjct:   56 EKRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEET 205
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Transcription and mRNA export factor SUS1 OS=Arabidopsis thaliana GN=SUS1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.643e-36
Identity = 79/117 (67.52%), Postives = 99/117 (84.62%), Query Frame = -3 
Query: 1885 MKHSVNRPPTPDGAED------QGNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAAL 2217
            MKHSVNRPPTPD  ED      + ++ TL+EIIN+KL+ESGEKE LMEL+R+RL+ECGWKDEM+  CR +VKKKGR +VT+D+L+ +ITPKGRASVPD VKAELL RI++F++SAAL
Sbjct:    1 MKHSVNRPPTPD--EDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDELIRVITPKGRASVPDSVKAELLNRIQNFIVSAAL 115
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_TAEGU (Transcription and mRNA export factor ENY2 OS=Taeniopygia guttata GN=ENY2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.590e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    2 NKDAQMRATINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKDVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 94
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_MOUSE (Transcription and mRNA export factor ENY2 OS=Mus musculus GN=Eny2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.101e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    7 NKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_HUMAN (Transcription and mRNA export factor ENY2 OS=Homo sapiens GN=ENY2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.101e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    7 NKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_BOVIN (Transcription and mRNA export factor ENY2 OS=Bos taurus GN=ENY2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.101e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    7 NKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_DANRE (Transcription and mRNA export factor ENY2 OS=Danio rerio GN=eny2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.302e-22
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -3 
Query: 1900 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFL 2166
              E  ++  IN KLIE GE+ERL ELLR +LIECGW+D++KALC+  +K+KG  NVT++DLV  +TPKGRA VPD VK ELLQRIR+FL
Sbjct:    2 SKESQMRAAINQKLIEMGERERLKELLRAKLIECGWRDQLKALCKEVIKEKGIENVTVEDLVAGVTPKGRALVPDSVKKELLQRIRAFL 90
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_XENLA (Transcription and mRNA export factor ENY2 OS=Xenopus laevis GN=eny2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.400e-21
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = -3 
Query: 1888 EPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2160
            +  ++ +IN KLIE+GE+ERL ELLR +LIECGW+D++KA C+  + +KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    4 DAQMKAVINQKLIETGERERLKELLRAKLIECGWRDQLKAHCKDVINEKGVEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRAFLAQHA 94
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_XENTR (Transcription and mRNA export factor ENY2 OS=Xenopus tropicalis GN=eny2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.155e-21
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = -3 
Query: 1888 EPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2160
            +  ++  IN KLIE+GE+ERL ELLR +LIECGW+D++KA C+  + +KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    4 DAQMKAAINQKLIETGERERLKELLRAKLIECGWRDQLKAHCKDVINEKGVEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRAFLAQHA 94
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2A_SALSA (Transcription and mRNA export factor ENY2-1 OS=Salmo salar GN=eny2-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.275e-18
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KL E GE+ERL ELLR +L ECGW+D++KALC+  +K+KG  + T++DLV  ITPKGR  VPD VK ELLQRIR+FL   A
Sbjct:    2 SKDSKMRATINQKLTEMGERERLKELLRAKLTECGWRDQLKALCKDVIKEKGLEHATVEDLVVEITPKGRVLVPDSVKRELLQRIRAFLAQHA 94
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2V3M5_GOSRA0.000e+0100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VWV0_GOSRA0.000e+0100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RZL2_GOSRA0.000e+099.34Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2V3L8_GOSRA0.000e+099.66Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061ED00_THECC0.000e+090.79DCD domain protein isoform 1 OS=Theobroma cacao GN... [more]
A0A0D2SFN1_GOSRA2.625e-18087.46Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TAL4_GOSRA9.130e-18087.13Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2P4N1_GOSRA4.230e-17886.80Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S8M6_GOSRA1.653e-17683.86Uncharacterized protein OS=Gossypium raimondii GN=... [more]
M5WTC6_PRUPE1.812e-17281.13Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
B2_DAUCA6.041e-8580.00B2 protein OS=Daucus carota PE=2 SV=1[more]
SUS1_ARATH2.643e-3667.52Transcription and mRNA export factor SUS1 OS=Arabi... [more]
ENY2_TAEGU5.590e-2261.29Transcription and mRNA export factor ENY2 OS=Taeni... [more]
ENY2_MOUSE6.101e-2261.29Transcription and mRNA export factor ENY2 OS=Mus m... [more]
ENY2_HUMAN6.101e-2261.29Transcription and mRNA export factor ENY2 OS=Homo ... [more]
ENY2_BOVIN6.101e-2261.29Transcription and mRNA export factor ENY2 OS=Bos t... [more]
ENY2_DANRE9.302e-2262.92Transcription and mRNA export factor ENY2 OS=Danio... [more]
ENY2_XENLA2.400e-2160.44Transcription and mRNA export factor ENY2 OS=Xenop... [more]
ENY2_XENTR8.155e-2160.44Transcription and mRNA export factor ENY2 OS=Xenop... [more]
ENY2A_SALSA1.275e-1855.91Transcription and mRNA export factor ENY2-1 OS=Sal... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013989Development/cell death domainSMARTSM00767dcdcoord: 167..299
e-value: 1.7E-86
score: 303.3
IPR013989Development/cell death domainPFAMPF10539Dev_Cell_Deathcoord: 170..296
e-value: 9.7E-41
score: 138.5
IPR013989Development/cell death domainPROSITEPS51222DCDcoord: 167..299
score: 53.614
NoneNo IPR availablePANTHERPTHR10857:SF43SUBFAMILY NOT NAMEDcoord: 34..302
NoneNo IPR availablePANTHERPTHR10857COPINEcoord: 34..302

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001237 ID=g.raimondii_cottongen_reftransV1_0001237; Name=g.raimondii_cottongen_reftransV1_0001237; organism=Gossypium raimondii; type=contig; length=2285bp
TCGTCACATAATTCTATAAATACAATGAAAATCCCTTCTTACATAATTTC
TCGCTGTCCCCCTCTGTGCCGTGTCTTGCGGGTTTCACTTCACAGCTAGC
AAAGGTAAAAAAGATAAAAAGAAAGAAAATAAAGGATCTGCAAGATGGAA
AGCATGAATAGCTTTTGGCAGTTAGGAGATGATCTCCGGGGACAATCTAA
AGCCTCAGAGGATCACAAATGGTTGATGGTTGCCTCCAAACTGGCTGAAC
AAACGAGGATAAAGGGTGAGCGTATGAACAATCTCGACCTTTCAAAGGGT
CCAGCTGAAGTAAGGACAAGGGATAAATTTGGGTTCCATGAAGACAACAA
ATTCGAGAACCTTAACTTCAATATGTTGAACTTGGACTCCAAGATCGGAG
ATAGTATAAGCAAAAGTACCTTCCGAAATGGTATTTACAACACCGATGCT
GTTTACCAGAAAAATAACAGCCACAACATTGGGAACCTGTCTGCCAACAA
ATATAGTGGCAACAACCATTGCAACAAAGATATTAATAATAACAGCAACA
CCAACTCCAACAACAACGAGAACAACAATGCAAACAATGCTGCCGATAAA
AGGTTCAAGACTTTGCCTGCCACCGAGACACTCCCGAGAAATGAGGTGCT
TGGTGGATACATCTTTGTTTGCAACAATGACACAATGCAAGAAGATCTTA
AGCGCCAGCTATTTGGTTTACCGCCAAGATACAGGGACTCTGTTCGGGCA
ATCACACCTGGCTTGCCATTGTTTCTCTATAACTACACCACTCATCAGTT
GCATGGTATTTTTGAGGCAGCAAGTTTTGGGGGTTCTAACATTGATCCAA
CTGCTTGGGAAGACAAAAAGTGTAAAGGCGAGTCGAGGTTTCCTGCTCAG
GTGAGAATCCGTATAAGAAAGGTATGCAAGGCATTGGAAGAGGATGCTTT
TAGGCCAGTCTTGCACCACTATGATGGTCCCAAGTTCCGTCTCGAGCTGT
CAGTTCCTGAGACTTTGGATCTAATGGACCTTTGTGAACAAGCAGGCTCC
CCATAAACAAAATGCTAGCCGAGTGCAAATGTAGTAGTAGTAGGGTTTGT
GATGCACGTTTCCGGAGATTTTTCCATAGAGCGCAAGCTGTGGTGGGTGT
TAAGTCCAGTTGGGGAAAAAGTAGGAAATGGCATTAGCCACATATGAATA
AATGCGTTCATGTCATGTGAAAGATGCATTGTAAAACTTTTGCATTAATA
TGCTATGAATTAAAATCCTATCAGATATATTTGCAAGATGTCAAAAGGAA
ATGGCAACTACGTGTAATGTTCAAGTCCTCAACAACTGAAGGTTTTGATG
TCTATTTTTGTGCTTATAATATGAACTTTCTCCTGTCTTCTTCAATCTCA
TTTTCAAAGTGAAGTCCTAAGTGCATGCAAATATGCAAATTCCAATTAAG
GTTTCTTCAATCTCTCATTCCAATCACCTAAGAGAACAAGCTAAAATAAT
TTAACCATGACTTCATTTGACTTCCCAGTTGTGTAGCAATAACTCAAAGA
GAGGATACTCATCATGGAAAGAAGTATAGCTTCAATCAGAGGATTTACAA
GGTCAAATATGTTGATCTAATGCACAGTTTTCCTCCCTTAAACCCAGCAA
TAGAAGCGTTTGTAGACAACCGAAACCATCTGTAATTTGCTGATCCTATC
ACAGCAAGAATGGATAAATGAAATTACATCCTCATGGCTGCAAACCCTAT
TCATTCCATTGGTGTAATCATTCAACAAGATGCTAAAGACGAACCCTATT
GAGGCTTCATTGAAGTCTATATTGCGCAGCTGACAGCTCTGTAACTTTCC
CCCCTCTTTGCTAATCAATGCATGCTGATGGTCAAAGAGCAGCGGACATG
AGAAAAGAACGAATTCTTTGCAATAGCTCAGCCTTTACGAAGTCTGGGAC
AGAAGCTCTGCCTTTTGGGGTGATCAAATGAACAAGGTCATCCAAAGTGA
CATTATTTCTTCCTTTCTTCTTAACATATGATCTGCAAAGAGCTTTCATC
TCATCCTTCCATCCACATTCTATAAGTCTTTCTCTTAACAGTTCCATTAA
TCTCTCTTTTTCCCCGCTTTCAATTAACTTGATATTAATAATTTCTTGAA
GGGTGGGTTCATTCCCTTGATCTTCTGCACCATCAGGGGTTGGAGGCCGA
TTTACTGAATGTTTCATGATGTTAAATTAAATCTCCCAAAATAGAAATGA
AAATTTGTGAGGAAATTGGAGAAATTTTTATACTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013989Dev_and_cell_death_domain