g.raimondii_cottongen_reftransV1_0001179, g.raimondii_cottongen_reftransV1_0001179 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A0D2MXH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G126400 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.593e-41 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = -2 Query: 286 MAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 594 MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL Sbjct: 1 MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 103
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A0D2PB29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G126500 PE=4 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.454e-37 Identity = 96/103 (93.20%), Postives = 102/103 (99.03%), Query Frame = -2 Query: 286 MAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 594 MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLG+LEAESVNQARA+N+HIL+LMDQLSKG+NLLIN+HPSPA ISIL Sbjct: 1 MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLGDLEAESVNQARAFNAHILSLMDQLSKGSNLLINSHPSPASISIL 103
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A061G9Q3_THECC (Response to low sulfur 3, putative OS=Theobroma cacao GN=TCM_015553 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.259e-22 Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = -2 Query: 286 MAPTMAAP----------EEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 594 MAPT A EE+LRKRN+ELE+ELK+SREREE MRK+L + WERL+V EEAEERLCSQLGELEAESVN+ARAYN+ IL+LMDQLSK NL++NNHPSP P+SIL Sbjct: 76 MAPTKAVADPKSIAKKEEEEDLRKRNKELERELKQSREREEGMRKQLTEAWERLKVVEEAEERLCSQLGELEAESVNEARAYNARILSLMDQLSKA-NLVVNNHPSPTPLSIL 187
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A067DPV7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033902mg PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.076e-16 Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = -2 Query: 310 MAPTMAAPEEE--LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHP 594 MAPTMA EEE LRKRN++LE+ELK+S+ERE QMR EL++ ERLR+AE+AEERLCSQLGELEAE+VNQAR Y++ IL+LMDQLS+ N LL+ +HP Sbjct: 1 MAPTMAVREEEVVLRKRNEDLERELKKSKERENQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQARDYHARILSLMDQLSQANQLLL-HHP 96
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: M0ZIJ1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000546 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.683e-14 Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = -2 Query: 325 KTASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 612 +T YH A PE E LR+RN+ELEKELK+S EREE+MR+EL+K+WERLRVAEEAEERLCSQLGE EAE+V+QARAY + ++ LMDQLS LL Sbjct: 11 QTKPYHRREISAVPESEVLRRRNEELEKELKKSFEREEKMREELQKIWERLRVAEEAEERLCSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLL 107
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A067JZ09_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25169 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.245e-13 Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = -2 Query: 307 LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPS 561 L+KRN+ELE+ LKES++REEQMR+EL+K W RL+VAEEAE RLC+QLGELEAESV+QARAYN+ IL+L+DQLS+ ++LL +N P+ Sbjct: 14 LKKRNEELERALKESKQREEQMREELQKPWRRLQVAEEAEGRLCTQLGELEAESVHQARAYNARILSLLDQLSQAHHLL-HNQPT 97
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: I1JYE8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.059e-13 Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = -2 Query: 316 PTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINN 588 P APE EL+KRN+ELEKEL+ES+EREEQM++EL+ WERLRVAEEAEERLCSQLGELEAE+V AR Y++ I++LMDQLS+ +LL+ Sbjct: 20 PATPAPENELKKRNEELEKELRESKEREEQMKRELQSAWERLRVAEEAEERLCSQLGELEAEAVYHARDYHARIVSLMDQLSRAQSLLLKT 110
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: V4TS22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022951mg PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.441e-13 Identity = 62/88 (70.45%), Postives = 78/88 (88.64%), Query Frame = -2 Query: 337 MAPTMAAPEEE--LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKG 594 MAPTMA EEE LRKRN++LE+ELK+S+ERE+QMR EL++ ERLR+AE+AEERLCSQLGELEAE+VNQAR Y++ IL+L+DQLS+ Sbjct: 1 MAPTMAVREEEVVLRKRNEDLERELKKSKEREDQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQARDYHARILSLVDQLSQA 88
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: I1KB44_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.483e-12 Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = -2 Query: 316 PTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINN 588 PT+ A E EL+KRN+ELEKEL+ES+EREEQM++EL+ WERLRVAEEAEERLCSQLGELEAE+V QAR Y++ I++LMDQLS+ +LL+ Sbjct: 20 PTVVA-ESELKKRNEELEKELRESKEREEQMKRELQSAWERLRVAEEAEERLCSQLGELEAEAVYQARDYHARIVSLMDQLSRAQSLLLKT 109
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: M0ZIJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000545 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.733e-12 Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = -2 Query: 325 ASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 606 A+ H A PE E LR+RN+ELEKELK+S EREE+MR+EL+K WERLRVAEEAEERLCSQLGELEAE+V+QARAY + ++ LMDQLS L Sbjct: 12 ANPHRREVSAVPESEVLRRRNEELEKELKKSIEREEKMREELQKTWERLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKFL 106 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001179 ID=g.raimondii_cottongen_reftransV1_0001179; Name=g.raimondii_cottongen_reftransV1_0001179; organism=Gossypium raimondii; type=contig; length=838bpback to top |