g.raimondii_cottongen_reftransV1_0001179, g.raimondii_cottongen_reftransV1_0001179 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001179
Unique Nameg.raimondii_cottongen_reftransV1_0001179
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length838
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr04chromosomeg.raimondii_cottongen_reftransV1_0001179:1..838 .
Chr04:33174201..33212742 +
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A0D2MXH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G126400 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.593e-41
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = -2
Query:  286 MAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 594
            MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL
Sbjct:    1 MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 103          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A0D2PB29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G126500 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.454e-37
Identity = 96/103 (93.20%), Postives = 102/103 (99.03%), Query Frame = -2
Query:  286 MAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 594
            MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLG+LEAESVNQARA+N+HIL+LMDQLSKG+NLLIN+HPSPA ISIL
Sbjct:    1 MAPTMAAPEEELRKRNQELEKELKESREREEQMRKELRKMWERLRVAEEAEERLCSQLGDLEAESVNQARAFNAHILSLMDQLSKGSNLLINSHPSPASISIL 103          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A061G9Q3_THECC (Response to low sulfur 3, putative OS=Theobroma cacao GN=TCM_015553 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.259e-22
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = -2
Query:  286 MAPTMAAP----------EEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPISIL 594
            MAPT A            EE+LRKRN+ELE+ELK+SREREE MRK+L + WERL+V EEAEERLCSQLGELEAESVN+ARAYN+ IL+LMDQLSK  NL++NNHPSP P+SIL
Sbjct:   76 MAPTKAVADPKSIAKKEEEEDLRKRNKELERELKQSREREEGMRKQLTEAWERLKVVEEAEERLCSQLGELEAESVNEARAYNARILSLMDQLSKA-NLVVNNHPSPTPLSIL 187          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A067DPV7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033902mg PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.076e-16
Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = -2
Query:  310 MAPTMAAPEEE--LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHP 594
            MAPTMA  EEE  LRKRN++LE+ELK+S+ERE QMR EL++  ERLR+AE+AEERLCSQLGELEAE+VNQAR Y++ IL+LMDQLS+ N LL+ +HP
Sbjct:    1 MAPTMAVREEEVVLRKRNEDLERELKKSKERENQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQARDYHARILSLMDQLSQANQLLL-HHP 96          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: M0ZIJ1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000546 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.683e-14
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = -2
Query:  325 KTASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 612
            +T  YH     A PE E LR+RN+ELEKELK+S EREE+MR+EL+K+WERLRVAEEAEERLCSQLGE EAE+V+QARAY + ++ LMDQLS    LL
Sbjct:   11 QTKPYHRREISAVPESEVLRRRNEELEKELKKSFEREEKMREELQKIWERLRVAEEAEERLCSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLL 107          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A067JZ09_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25169 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.245e-13
Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = -2
Query:  307 LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPS 561
            L+KRN+ELE+ LKES++REEQMR+EL+K W RL+VAEEAE RLC+QLGELEAESV+QARAYN+ IL+L+DQLS+ ++LL +N P+
Sbjct:   14 LKKRNEELERALKESKQREEQMREELQKPWRRLQVAEEAEGRLCTQLGELEAESVHQARAYNARILSLLDQLSQAHHLL-HNQPT 97          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: I1JYE8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.059e-13
Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  316 PTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINN 588
            P   APE EL+KRN+ELEKEL+ES+EREEQM++EL+  WERLRVAEEAEERLCSQLGELEAE+V  AR Y++ I++LMDQLS+  +LL+  
Sbjct:   20 PATPAPENELKKRNEELEKELRESKEREEQMKRELQSAWERLRVAEEAEERLCSQLGELEAEAVYHARDYHARIVSLMDQLSRAQSLLLKT 110          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: V4TS22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022951mg PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.441e-13
Identity = 62/88 (70.45%), Postives = 78/88 (88.64%), Query Frame = -2
Query:  337 MAPTMAAPEEE--LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKG 594
            MAPTMA  EEE  LRKRN++LE+ELK+S+ERE+QMR EL++  ERLR+AE+AEERLCSQLGELEAE+VNQAR Y++ IL+L+DQLS+ 
Sbjct:    1 MAPTMAVREEEVVLRKRNEDLERELKKSKEREDQMRLELQRACERLRLAEDAEERLCSQLGELEAEAVNQARDYHARILSLVDQLSQA 88          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: I1KB44_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.483e-12
Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = -2
Query:  316 PTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINN 588
            PT+ A E EL+KRN+ELEKEL+ES+EREEQM++EL+  WERLRVAEEAEERLCSQLGELEAE+V QAR Y++ I++LMDQLS+  +LL+  
Sbjct:   20 PTVVA-ESELKKRNEELEKELRESKEREEQMKRELQSAWERLRVAEEAEERLCSQLGELEAEAVYQARDYHARIVSLMDQLSRAQSLLLKT 109          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: M0ZIJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000545 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.733e-12
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = -2
Query:  325 ASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 606
            A+ H     A PE E LR+RN+ELEKELK+S EREE+MR+EL+K WERLRVAEEAEERLCSQLGELEAE+V+QARAY + ++ LMDQLS     L
Sbjct:   12 ANPHRREVSAVPESEVLRRRNEELEKELKKSIEREEKMREELQKTWERLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKFL 106          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2MXH7_GOSRA2.593e-41100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PB29_GOSRA4.454e-3793.20Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G9Q3_THECC1.259e-2269.91Response to low sulfur 3, putative OS=Theobroma ca... [more]
A0A067DPV7_CITSI5.076e-1670.10Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
M0ZIJ1_SOLTU9.683e-1467.01Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A067JZ09_JATCU4.245e-1369.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
I1JYE8_SOYBN5.059e-1368.13Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V4TS22_9ROSI7.441e-1370.45Uncharacterized protein OS=Citrus clementina GN=CI... [more]
I1KB44_SOYBN1.483e-1269.23Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M0ZIJ0_SOLTU3.733e-1267.37Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableCOILSCoilCoilcoord: 9..40
NoneNo IPR availablePANTHERPTHR34283FAMILY NOT NAMEDcoord: 3..96
NoneNo IPR availablePANTHERPTHR34283:SF1SUBFAMILY NOT NAMEDcoord: 3..96

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001179 ID=g.raimondii_cottongen_reftransV1_0001179; Name=g.raimondii_cottongen_reftransV1_0001179; organism=Gossypium raimondii; type=contig; length=838bp
CAGCTTTCCTTTTCATTTTACCAAACTATTTTTAATATATTTGAAGAAGA
AAAAAACACAAATTTTTTTATATATCAGAATTAAATCAACTTAATTGAGT
TTCACAATATGAAACAGCCAGTGAAACATATCAGCACTACCTTTACCAAT
TAACATCAACAAACACCACCAAGTGTTAACAACTATTACATATATAGATC
CATACCATACCCATAATTAACGAATTTAGAATCCCCATGCCTTTGGTTAG
ATAGATAAAAAGAACATCAGCCAAAAGCAGAATCAGAGGATGGAGATGGG
TGCAGGGGATGGGTGGTTGTTGATGAGAAGGTTGTTACCCTTGGAGAGCT
GGTCCATGAGGGTAAGTATGTGGGAGTTGTAAGCACGGGCCTGATTGACG
GACTCTGCTTCCAGCTCGCCCAGCTGAGAACAGAGCCTTTCCTCCGCCTC
TTCCGCCACCCTCAGCCTTTCCCACATCTTTCGTAATTCCTTTCTCATCT
GCTCCTCTCTTTCCCTACTCTCCTTCAATTCCTTCTCTAACTCCTGGTTC
CTCTTCCTCAACTCTTCTTCTGGTGCCGCCATTGTTGGAGCCATGTGATA
GCTTGCTGTTTTTTGTTTTTTCTTCTAGTGGAGTTGTGAATCAACCAATG
TGGAGGAATCGATTCTCTTAAAGGCCTAGGACCCTCCGACGCAAAGTGTC
CAGGTTCAATGTATCTAGTTTGCTTCGCCTTGTTTCGTCGTCGTCTTCTT
TTTTTCTAATTATTATATTTGCTTACGTGCTTGCTTTGCAAATTCAATTT
TTGAACCTTCAATTTTCAATTCTTAAGTCTTATCCCCA
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