g.raimondii_cottongen_reftransV1_0001178, g.raimondii_cottongen_reftransV1_0001178 (contig) Gossypium raimondii

Overview


Name	g.raimondii_cottongen_reftransV1_0001178
Unique Name	g.raimondii_cottongen_reftransV1_0001178
Type	contig
Organism	Gossypium raimondii (Gossypium raimondii)
Sequence length	2238

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr07	chromosome	g.raimondii_cottongen_reftransV1_0001178:1..2238 . Chr07:36481152..36485062 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium raimondii CottonGen RefTrans V1	2016-11-09
InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt	2016-11-09

Homology

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A0D2PED7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G244700 PE=4 SV=1)

HSP 1 Score: 531.561 bits (1368), Expect = 7.486e-180
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 1778
            SWRALRIQKVENESKVSSSAATLDKAPSASSPVSVSKTNWWENLSDEDNEDLDLEDLSKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS
Sbjct:   94 SWRALRIQKVENESKVSSSAATLDKAPSASSPVSVSKTNWWENLSDEDNEDLDLEDLSKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 384

HSP 2 Score: 199.904 bits (507), Expect = 2.022e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL
Sbjct:    1 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 93

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A0B0MYF6_GOSAR (Programmed cell death protein 2-like protein OS=Gossypium arboreum GN=F383_26463 PE=4 SV=1)

HSP 1 Score: 509.22 bits (1310), Expect = 3.725e-171
Identity = 278/291 (95.53%), Postives = 281/291 (96.56%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 1778
            SWRALRIQKVENESK SSSAATLDKAPSASS VSV KTNWWENLSDEDNEDLDLEDLS+AFSEV SLSSEPKK SS RNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNH SLSVKEKEGD+DDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLAT EVDNAG CGLCGASRHFELQLMPPLIYFLQ EVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETV+VQFDKPLNECLQRYFS
Sbjct:   94 SWRALRIQKVENESKESSSAATLDKAPSASSLVSVPKTNWWENLSDEDNEDLDLEDLSRAFSEVASLSSEPKKTSSYRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHLSLSVKEKEGDVDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATTEVDNAGNCGLCGASRHFELQLMPPLIYFLQ-EVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVIVQFDKPLNECLQRYFS 383

HSP 2 Score: 193.356 bits (490), Expect = 4.115e-51
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLN+EDRLLLVF CV PNCGSS L
Sbjct:    1 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNVEDRLLLVFGCVAPNCGSSSL 93

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A061DJX6_THECC (Programmed cell death 2 C-terminal domain-containing protein, putative OS=Theobroma cacao GN=TCM_001256 PE=4 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 8.037e-141
Identity = 232/291 (79.73%), Postives = 257/291 (88.32%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 1778
            SWRALRIQKVEN++K  SS AT +K P+A+SPVSVSKTNWW+ L DED+ED+DLEDLSKAFSE  SL+S+PKK +SNRNSE AVKH   L AQT  +DTDTPVMPCFYIYSQAEPSSK+F+SM SN++SLSVKEKEGD+DDHGQEETW+AENYEYDKAL+ADRTYLKFKKQLDASPEQCFRYAFGGKPLLA AEV +AGKC LCGASRHFE+QLMPPLIYFLQEE D CHK SLENWNWL L VYTCSKSCS  FD+EKS    G WFVVEETV+VQF+KPLNEC +RYFS
Sbjct:   92 SWRALRIQKVENDAKEFSSTATQEKVPAAASPVSVSKTNWWQKLGDEDDEDVDLEDLSKAFSEAASLTSQPKKTNSNRNSETAVKHPSPLTAQTIRIDTDTPVMPCFYIYSQAEPSSKNFASMYSNYTSLSVKEKEGDVDDHGQEETWKAENYEYDKALSADRTYLKFKKQLDASPEQCFRYAFGGKPLLAVAEVGDAGKCRLCGASRHFEMQLMPPLIYFLQEEADACHKASLENWNWLMLAVYTCSKSCSKPFDKEKS--NSGDWFVVEETVIVQFEKPLNECAERYFS 380

HSP 2 Score: 166.777 bits (421), Expect = 6.254e-42
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            MS VVLGLPGPWAE  REPSDHYTTKIGGLPDWPLPIEAL  NP+LIHCT+CGSKLCLVAQVYAPVSS TL IE+RLLLVF CVTP CGS+PL
Sbjct:    1 MSGVVLGLPGPWAEHYREPSDHYTTKIGGLPDWPLPIEAL--NPSLIHCTKCGSKLCLVAQVYAPVSSETLKIEERLLLVFGCVTPTCGSTPL 91

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: V4S1N7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026167mg PE=4 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 3.541e-103
Identity = 185/292 (63.36%), Postives = 233/292 (79.79%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQ-RYFS 1778
            SWRALR+QK++N  +  S +A+ + APS +SPVSVSKT+WW++ ++E+++D+DLE+L KA SE  SL+S  KK +SNR+S+ AVK S  L  + RGVD DTPV+PCFYI +Q EPSSKD +S+ SN+SSLS+KEK+ ++DDH QEETW  E+YEYD+AL ADRTYLKFKK+LDA PEQCFRY++GGKPLLA AEV +AG+C LCGASRHFE+QLM PLIYFLQE  +DC  GSL+NWNW+TL+VYTCSK+CSNS  +EKS   +  W V EE V VQF+K  NE  Q  YFS
Sbjct:   10 SWRALRVQKLDNAKE--SCSASQEVAPSNASPVSVSKTSWWDDENEEEDDDVDLEELGKALSEAASLTSHSKKPNSNRHSKSAVKPS-HLSPRVRGVDVDTPVVPCFYICTQEEPSSKDVASIWSNYSSLSLKEKQSNVDDHVQEETWGEEHYEYDRALTADRTYLKFKKRLDAYPEQCFRYSYGGKPLLAMAEVGDAGRCRLCGASRHFEMQLMSPLIYFLQEAANDCLNGSLDNWNWMTLIVYTCSKNCSNSIKQEKS---NRDWLVAEEAVTVQFEKSPNESAQLNYFS 295

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: V4UP53_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026167mg PE=4 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.964e-102
Identity = 185/292 (63.36%), Postives = 233/292 (79.79%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQ-RYFS 1778
            SWRALR+QK++N  +  S +A+ + APS +SPVSVSKT+WW++ ++E+++D+DLE+L KA SE  SL+S  KK +SNR+S+ AVK S  L  + RGVD DTPV+PCFYI +Q EPSSKD +S+ SN+SSLS+KEK+ ++DDH QEETW  E+YEYD+AL ADRTYLKFKK+LDA PEQCFRY++GGKPLLA AEV +AG+C LCGASRHFE+QLM PLIYFLQE  +DC  GSL+NWNW+TL+VYTCSK+CSNS  +EKS   +  W V EE V VQF+K  NE  Q  YFS
Sbjct:   93 SWRALRVQKLDNAKE--SCSASQEVAPSNASPVSVSKTSWWDDENEEEDDDVDLEELGKALSEAASLTSHSKKPNSNRHSKSAVKPS-HLSPRVRGVDVDTPVVPCFYICTQEEPSSKDVASIWSNYSSLSLKEKQSNVDDHVQEETWGEEHYEYDRALTADRTYLKFKKRLDAYPEQCFRYSYGGKPLLAMAEVGDAGRCRLCGASRHFEMQLMSPLIYFLQEAANDCLNGSLDNWNWMTLIVYTCSKNCSNSIKQEKS---NRDWLVAEEAVTVQFEKSPNESAQLNYFS 378

HSP 2 Score: 138.658 bits (348), Expect = 5.364e-32
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            M +V+LG+PGPWA DNREPSDHYT+KIGGLPDWP  ++A+  +  L+ C  CGSKLCLVAQVYAP+SS  L IE+R +LVF CV P CGSSPL
Sbjct:    1 MGKVILGMPGPWAVDNREPSDHYTSKIGGLPDWPASLDAIT-STNLLQCGACGSKLCLVAQVYAPLSSEGLKIEERNVLVFGCVMPKCGSSPL 92

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: B9STA9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0431540 PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.814e-85
Identity = 163/293 (55.63%), Postives = 210/293 (71.67%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWX-XXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQR-YFS 1778
            SWRALR+Q++++E K S+S    +    +++PVSVSKTNW E    DE ++DLDL+ L KA SE  SL+S  KK       E  V +S  +I +TR VD D+PV+PCFYIY+Q EP S + +S+CSN+S+LS+K+K+    D  QEE W  E YEYDKAL ADRTYLKFKK+LDA+PEQCFRY FGG+PLLA  EV++ G C LCG  RH+E+QLMPPLIYFLQ+   D  K +LENWNW+TL+V+TCSKSCSN  ++ K  +  G W VVEE V+VQ + PL+E +   YFS
Sbjct:   93 SWRALRLQRLDDERKPSTSFE--EAVAVSTTPVSVSKTNWLECLDDDESDKDLDLDALGKALSEAGSLASHSKKPQKTDQYESLV-NSPPMITRTRMVDMDSPVVPCFYIYTQKEPPSGNVTSICSNYSTLSIKDKQSGDGDQEQEEVWGEEAYEYDKALTADRTYLKFKKKLDANPEQCFRYLFGGRPLLAKPEVEDPGTCKLCGGPRHYEMQLMPPLIYFLQDVAADSQKHALENWNWMTLIVFTCSKSCSNPSNQAK--NETGGWIVVEEAVVVQLETPLHESVHLGYFS 380

HSP 2 Score: 125.561 bits (314), Expect = 1.400e-27
Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352
            MSR+VLG+PG WA+DNREPSD YT+KIGGLPDWP   E+L  +  L++C+ CG+KLCLVAQV AP+SS +   +DRLLLVF C+ P CGS+
Sbjct:    1 MSRLVLGMPGAWADDNREPSDCYTSKIGGLPDWPFSQESLTPS-NLLNCSVCGAKLCLVAQVCAPISSSSFKADDRLLLVFGCLLPECGSN 90

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: B9HG25_POPTR (Programmed cell death 2 C-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0007s06650g PE=4 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.047e-83
Identity = 170/294 (57.82%), Postives = 212/294 (72.11%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDF-SSMCSNHSSLSVKEKE-GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNE-CLQRYFS 1778
            SWRALR+QKV++E +   S+ + ++   ++ PVSVSKTNW  + SDED +   L    KA SE  +L+S  KK   NR SE  VK+S +L+A+T GVD +TPV+PCFY+Y+Q EPSSKD  SS+CS +S LSVKE++  + +D    +  E E YEYDKAL+ADRTYLKFKKQLDA+P+QC R+ +GGKPLLATAE+ + G C LCG  RHFE+QLMP LI FL +  DDC K  LENWNW+TLV+YTCSKSCSNSFD EKS      W V EE VLVQF+K L+E  L  YFS
Sbjct:   95 SWRALRVQKVDSERE---SSVSTEEVVPSTPPVSVSKTNWLGDDSDEDIDLEALS---KALSEAGTLASHSKKKDGNRRSESVVKNS-TLVART-GVDMETPVVPCFYMYTQ-EPSSKDIVSSICSTYSELSVKEEQICNYNDDEMGDAGEQEVYEYDKALSADRTYLKFKKQLDANPDQCSRHLYGGKPLLATAELGDPGNCKLCGGFRHFEMQLMPQLISFLLDGADDCQKNVLENWNWMTLVIYTCSKSCSNSFDREKSTTSG--WTVAEEAVLVQFEKALHESILPGYFS 377

HSP 2 Score: 134.42 bits (337), Expect = 1.240e-30
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 2

Query:  110 PWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            PWA+DNREPSD YT+KIGGLPDWP P E L   P L+ C  CGSKLCLVAQVYAP+SSGTLNIEDR +LVF C+ PNCG++PL
Sbjct:   14 PWADDNREPSDLYTSKIGGLPDWPFPAENLA--PNLLICGACGSKLCLVAQVYAPISSGTLNIEDRTILVFGCIIPNCGNTPL 94

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: W9SP75_9ROSA (Programmed cell death protein 2-like protein OS=Morus notabilis GN=L484_008330 PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.139e-76
Identity = 129/226 (57.08%), Postives = 163/226 (72.12%), Query Frame = 3

Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGV-DTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKE---GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDK 1745
            KA  E  +++S  KK  SN  S+  +K S S  + T  V DT TPV+PCFY+Y Q EP+SKD +S+CSN+SSLS+KE E   GD +D+  EE+W  E YEYD+AL  DRTYLKFKK+LDA PEQCFRY +GGKPL+A  E  + GKC +CG SRHFE+QLMPPL+YFLQE  DD  + SLENWNW+T++VYTCS SCS    ++++   +G W V EE V VQF+K
Sbjct:  103 KALFEAATMASHAKKSHSNEKSKTNIKPSSS--STTLQVEDTKTPVVPCFYVYMQKEPTSKDVTSICSNYSSLSIKENEENKGDSEDNVPEESWAEEKYEYDRALTTDRTYLKFKKRLDAYPEQCFRYLYGGKPLMAEKEEGDPGKCRICGGSRHFEMQLMPPLLYFLQEAADDSQRQSLENWNWMTVIVYTCSNSCSLPSSDQENSSNNG-WIVAEEAVFVQFEK 325

HSP 2 Score: 95.5153 bits (236), Expect = 6.615e-18
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQ 262
            M+ V+LG+PGPWA+DNREPSDHYTTK+GGLPDWPL  +AL  N  L++C+ CGSKL L+ Q
Sbjct:    1 MAEVLLGMPGPWADDNREPSDHYTTKVGGLPDWPLTKDALGSN--LLNCSVCGSKLSLITQ 59

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A059B8F2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04843 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.841e-76
Identity = 145/294 (49.32%), Postives = 192/294 (65.31%), Query Frame = 3

Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS*FT 1787
            SWRA+RIQ+   E +  S++   D   +A+  VS  + NWW +L + D +    E   +A +E  +++S  KK++   NSE   K SLS    +R VD   PVMPCFYIY+  EP SKD +S C N+SSLS+     ++D+H +EE  + E+YEYD+AL ADRTY KFKK+LDA PEQC RY+ GGKPLLAT E+ + G+C LCG  R FE+QLMPPL+YFL E  DD  K +LENWNW+T ++YTCSKSC +S +EE      G W V EE VLVQ +K L + +  Y S +T
Sbjct:   92 SWRAIRIQRSCEEKE--SNSTCCDMGMAATPSVSAGENNWWNDLDENDEDVDLEELG-RALAEAATVTSSSKKLNRQENSEEVAKLSLSR-PISRQVDDSIPVMPCFYIYTLEEPYSKDATSACLNYSSLSI-----NVDNHVREEVLDEESYEYDRALMADRTYFKFKKRLDAYPEQCLRYSNGGKPLLATKEIGDPGRCKLCGGPRQFEMQLMPPLLYFLHEAADDSQKDALENWNWMTAIIYTCSKSCYDSQNEE---FRSGDWIVAEEAVLVQCEKSLKQAVLDYISHYT 373

HSP 2 Score: 134.806 bits (338), Expect = 1.206e-30
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2

Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            M RV LG+PGPWA+DNRE SDHYT KIGGLPDWP P+  + +    + C+ CG+KLCLV QV AP++SG L +EDR+L +FAC+ P CGSSPL
Sbjct:    1 MGRVFLGMPGPWADDNREASDHYTAKIGGLPDWPSPL--MDWGSDFLKCSICGNKLCLVGQVPAPITSGNLKVEDRVLYIFACIAPKCGSSPL 91

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: F6H4B0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01650 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.250e-72
Identity = 127/234 (54.27%), Postives = 165/234 (70.51%), Query Frame = 3

Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQR-YFS 1778
            +A S   SL+S  KK  +N++++   KH L L   TR V  D PV+PCFY Y+Q EPS+++ + + SN+S            D  QEETWE E+YEYD+  NADRTYLKFKK +DA PEQCFRYA+GGKPLLATA+V+N G C LCG  RH+E+QLMPPL+YFLQE  +DC K  L++WNW+TLVVYTCSKSCS+ FD++   +  G W V EE V++QF++ L E + + YFS
Sbjct:  157 RALSVAASLASHSKKQMNNQDTKTTEKH-LPLSLGTRVVAIDAPVLPCFYTYTQEEPSTREVTVVSSNYSQ-----------DSEQEETWEKESYEYDRTWNADRTYLKFKKSMDAFPEQCFRYAYGGKPLLATAKVENPGTCKLCGGPRHYEMQLMPPLLYFLQEGANDCKKHLLDHWNWMTLVVYTCSKSCSH-FDDKGKFNIEG-WVVAEEAVVIQFEESLQESVHKDYFS 376

HSP 2 Score: 114.775 bits (286), Expect = 5.584e-24
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 2

Query:   95 LGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIH---CTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNC 343
            LG+PGPWA+DN EPSDHYT KIGGLPDWP+P    +F   + H   C  C S LCLVAQVYAP+S  +L IE+R++ +F CV P C
Sbjct:   11 LGMPGPWADDNSEPSDHYTIKIGGLPDWPVP----QFPSAITHILRCAACQSNLCLVAQVYAPISGKSLKIEERVIYIFGCVAPEC 92

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_CHICK (Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.600e-15
Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 3

Query: 1110 SEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKE---KEGDIDDHGQEETWEAEN----YEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLAT---AEVDNA-GKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            SE   +S + N++  ++  + +        T  PV   +YI    E     F  + ++H++  +KE   +EG   +H   E++  E+    YE  K  + D T+ KF K++   PEQ  RY++GG+PL  T   A  DN+   C  CG++R FE QLMP L+  L  + D     S+E   + T++VYTC +SC
Sbjct:  177 SEAADVSGSLNTDLLLREEMVMA-------TSAPVFHSYYISVVDEADYAGF--LDTDHANKLLKEYQQREGVDLEHLMSESFAGEDSNEKYEKTKVRSGDHTFHKFMKRISVCPEQILRYSWGGQPLFITCPPANFDNSIPACSNCGSNRVFEFQLMPALVSMLWGDADL----SVE---FGTVIVYTCERSC 354

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_SCHPO (Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.353e-12
Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 3

Query: 1341 ETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAE---------VDNAGK-----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEK 1682
            E WE E+YE   ++  ++T+  F +++  +P QC RY  GG PLLA+           V N GK     C LC + R FE+QLMP  I  L +E+ +          W T++V TCS  C+   ++++
Sbjct:  267 EAWEKESYEKSPSV-YEKTFRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSVTNFGKSPVPLCPLCKSPRLFEMQLMPHAISILNDEIAE----------WSTILVATCSMDCNPPINKDR 383

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_HUMAN (Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.797e-12
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 3

Query: 1170 SLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLS-VKEKEGDIDDHGQEETWEA---ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            +++     V    P+   +YI    E   +DF ++   HS L   +++EG   D    ++      E YE     + D+T+ KF K++ A  EQ  RY++ G+PL     T+EV     C  CG  R FE QLMP L+  L+      + G    +   T++VYTC KSC
Sbjct:  170 AVLGAAHPVPPGLPLFLPYYICVADEDDYRDFVNLDHAHSLLRDYQQREGIAMDQLLSQSLPNDGDEKYEKTIIKSGDQTFYKFMKRIAACQEQILRYSWSGEPLFLTCPTSEVTELPACSQCGGQRIFEFQLMPALVSMLKSA----NLGLSVEFG--TILVYTCEKSC 333

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_MOUSE (Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.237e-9
Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 3

Query: 1356 ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            E YE     + D T+ +F K++ A  EQ  RY++ G+PL     T EV     C  CG  R FE QLMP L+  L       + G    +   T++VYTC +SC
Sbjct:  242 EKYEKTTVSSGDPTFYRFMKRIAACQEQILRYSWSGEPLFLSCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSA----NLGLAVEFG--TILVYTCKQSC 339

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_YEAST (20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.283e-8
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 3

Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLL-ATAEVDNAGKCGLCG----ASRHFELQLMPPLIYFLQEEVDDCHKGSLEN-WNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQ 1736
            D T+ KF++ +  +P Q  RY  GGKPLL A  +VD        G    + R FE+QLMP +I+ L+E V      S++N   W T++V+T  ++    FDE    HG G    VEE V VQ
Sbjct:  295 DDTFQKFQEVVGYNPLQVLRYDLGGKPLLYAETKVDILSTVPRPGYNPSSQRIFEMQLMPKMIFDLEEVV------SVDNGMEWGTILVFTDVENYMPEFDE----HGVG---YVEECVKVQ 403

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.635e-7
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 3

Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGK----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            DR + KFK ++   PEQ  RY  G  PL  + E     K    C  CGA R FE Q+MP L+ +L+ +          + +W  L ++TC++SC
Sbjct:  238 DRIFRKFKTKISLEPEQILRYGRGIAPLWISGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLG------RSVDWGVLAIFTCAESC 324

The following BLAST results are available for this feature:

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot

BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2PED7_GOSRA	7.486e-180	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0MYF6_GOSAR	3.725e-171	95.53	Programmed cell death protein 2-like protein OS=Go...	[more]
A0A061DJX6_THECC	8.037e-141	79.73	Programmed cell death 2 C-terminal domain-containi...	[more]
V4S1N7_9ROSI	3.541e-103	63.36	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4UP53_9ROSI	8.964e-102	63.36	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
B9STA9_RICCO	1.814e-85	55.63	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9HG25_POPTR	4.047e-83	57.82	Programmed cell death 2 C-terminal domain-containi...	[more]
W9SP75_9ROSA	1.139e-76	57.08	Programmed cell death protein 2-like protein OS=Mo...	[more]
A0A059B8F2_EUCGR	2.841e-76	49.32	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
F6H4B0_VITVI	1.250e-72	54.27	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 6


Match Name	E-value	Identity	Description
PDD2L_CHICK	4.600e-15	31.96	Programmed cell death protein 2-like OS=Gallus gal...	[more]
TSR4_SCHPO	1.353e-12	33.59	Probable 20S rRNA accumulation protein 4 OS=Schizo...	[more]
PDD2L_HUMAN	1.797e-12	31.18	Programmed cell death protein 2-like OS=Homo sapie...	[more]
PDD2L_MOUSE	1.237e-9	36.54	Programmed cell death protein 2-like OS=Mus muscul...	[more]
TSR4_YEAST	1.283e-8	38.52	20S rRNA accumulation protein 4 OS=Saccharomyces c...	[more]
PDCD2_BOVIN	7.635e-7	35.11	Programmed cell death protein 2 OS=Bos taurus GN=P...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007320	Programmed cell death protein 2, C-terminal	PFAM	PF04194	PDCD2_C	coord: 114..286 e-value: 3.5E-36 score: 124.7
None	No IPR available	PANTHER	PTHR12298	PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED	coord: 10..288

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.raimondii_cottongen_reftransV1_0001178 ID=g.raimondii_cottongen_reftransV1_0001178; Name=g.raimondii_cottongen_reftransV1_0001178; organism=Gossypium raimondii; type=contig; length=2238bp
CTCCCTCTCTGTTTACTTGGTTGTGGAGAAACCTTTTTATTTCCAAAGGC
ATCGGTTTACGTCGCTATTTGAAAGCTTGATGAGTAGGGTTGTGCTAGGC
TTGCCAGGGCCATGGGCTGAGGATAACCGTGAGCCGTCTGATCATTACAC
TACCAAAATTGGTGGACTTCCTGATTGGCCTCTTCCTATAGAGGCTTTGA
AGTTCAACCCTACACTTATTCACTGCACACAATGTGGAAGTAAACTCTGT
CTTGTTGCTCAGGTTTATGCTCCAGTTTCAAGTGGAACTTTGAACATAGA
AGACCGTCTACTTCTTGTTTTTGCTTGTGTGACACCAAATTGTGGTAGCT
CTCCTCTCAGGTTGTTTCTCTGATTTGTTTGTTTGACCCTTGTTTATCAT
TTAAACATGATTCTTTTAACTGCATAGGTGTTATGTTCTCTTTTAGTCAG
TGTTGTCAAGGCGTGTTCTTAGGTGCGCCGGCGCGCCTTGGCACTGGACA
GCAAAATCGCCTAAGGCCCTTTCAGGAGAAGTCCATTTAATCAGGTGCAC
ACCTACTGCACGTAGGCACCTACTTTTGTAAGGAAGCCTGCCTAATTGAA
GTTATCCTTAATTTCTTTTAATTTTCACTTTTTTTCGTTAGATATGCCTT
AGTAAAAAGAGGATAGTACCAGACTCTAATACATCTTAATATTTGAGTAT
TCAACAATAGACATTGACCATAGGGAAATCAAGTATATTGACCAATAAAA
AAATGCATGTTTTGTAGATAAACTAGACCAGACTTCAGAGTTTATTATAA
ATCTCAAGCTTTATATTACATATAAAAATTCACACATTTACATATTGCTC
ATTACTTTTCTCAGGCTAGTGCTTTTTTTTGCCTTGTGCGTTGCGCCTAA
GGCAAAGTTGGCGAGCTCTTCGGATTCAGAAAGTGGAAAATGAATCAAAG
GTATCATCCTCTGCTGCTACTCTGGATAAAGCTCCTTCAGCTTCATCTCC
TGTTTCTGTTTCAAAAACTAACTGGTGGGAGAATTTGAGTGATGAGGATA
ATGAAGATTTGGATTTGGAGGACTTGAGTAAAGCATTTTCTGAAGTGACA
AGCTTGAGTTCTGAGCCCAAGAAGATAAGTAGCAACCGGAACTCTGAGGG
TGCTGTGAAGCATTCTTTGTCTTTAATTGCACAAACAAGAGGGGTAGATA
CTGATACACCAGTGATGCCATGCTTCTACATTTATAGTCAGGCGGAACCA
TCATCAAAGGATTTTTCTTCTATGTGTTCAAATCACTCGTCACTTTCAGT
CAAGGAGAAAGAAGGTGATATTGATGATCATGGACAAGAAGAAACATGGG
AAGCTGAAAATTATGAATATGATAAGGCTCTGAATGCTGACAGGACTTAT
CTCAAGTTCAAAAAACAATTGGATGCATCTCCAGAGCAATGTTTTAGATA
TGCATTCGGTGGGAAACCTCTTCTGGCTACAGCAGAGGTGGATAATGCTG
GGAAATGCGGGCTTTGTGGTGCATCAAGGCACTTTGAACTGCAGCTTATG
CCCCCATTAATATATTTTCTGCAAGAAGAAGTCGATGATTGTCATAAAGG
TTCTCTGGAGAACTGGAACTGGCTGACTCTTGTTGTCTATACCTGTTCCA
AGAGCTGTTCTAATTCATTTGATGAAGAGAAGTCCATCCATGGCCATGGT
CAATGGTTTGTCGTAGAGGAGACTGTTCTCGTGCAATTCGATAAGCCCTT
AAATGAGTGTCTTCAACGCTATTTCTCATGATTTACAATTTTTGTCAAAC
ATTTGTGTGAATCGGAACTCTTTCAGTCTTTAATCTATGTTGAGCAGCTT
CCATGCATACAGAGATGAACTTACAAGGATCCTGAAAGTTTACTGATTTA
TTTTATGCCCTCGACAAAGCTAGAGCGTGTCATTATTATCTCTGACAAAG
TGTTATGCGTTGGTTGAAGATCGATGAGAGGTATCAAATTTTGTATCATG
ATCTTTGGTTTGCTTTAGTTTATAACTTAAATTCTTCTGTTATCCTATGT
AGATGGTTTTCATGGCATTAAATTGCACAAGGATCTTTCTACATGGCTTA
CTGGACTACTTTCTTTAATCATCATCTATCTATAAACGAAGTCTTTGATT
GAATTTGATGTCACCAACTCAAGAAAGTATTTATGATTTTGTTTATAAAT
AATAGAATTTCAACTTTCAAGCCGCTGTGATGCATCTA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR007320	PDCD2_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Search form

g.raimondii_cottongen_reftransV1_0001178, g.raimondii_cottongen_reftransV1_0001178 (contig) Gossypium raimondii

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