g.raimondii_cottongen_reftransV1_0001141, g.raimondii_cottongen_reftransV1_0001141 (contig) Gossypium raimondii

Overview


Name	g.raimondii_cottongen_reftransV1_0001141
Unique Name	g.raimondii_cottongen_reftransV1_0001141
Type	contig
Organism	Gossypium raimondii (Gossypium raimondii)
Sequence length	994

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr09	chromosome	g.raimondii_cottongen_reftransV1_0001141:1..994 . Chr09:2996095..2997087 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium raimondii CottonGen RefTrans V1	2016-11-09
InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt	2016-11-09

Homology

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A0D2TDB0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G040500 PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 6.265e-72
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 3

Query:  123 MEPRGACRSNRSSFEKWVAIVLTFLAVVSPLYVNQKPTELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYINKGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNAG 677
            MEPRGACRSNRSSFEKWVAIVLTFLAVVSPLYVNQKPTELELEEQSMDFTSWLCLLFVLLLLAFAFWLYLNQSFTRFDRHWIRPSRYSSYERLVAIGLIVLGVLSPLYINKGTSELEPDEQPINFASWLPLLLLILTLAIATLLFCDRGCTKFDPNWIHRVGGSSAGILLVLLILAVVLKCKNAG
Sbjct:    1 MEPRGACRSNRSSFEKWVAIVLTFLAVVSPLYVNQKPTELELEEQSMDFTSWLCLLFVLLLLAFAFWLYLNQSFTRFDRHWIRPSRYSSYERLVAIGLIVLGVLSPLYINKGTSELEPDEQPINFASWLPLLLLILTLAIATLLFCDRGCTKFDPNWIHRVGGSSAGILLVLLILAVVLKCKNAG 185

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A061GJH6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037389 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.206e-42
Identity = 146/188 (77.66%), Postives = 159/188 (84.57%), Query Frame = 3

Query:  123 MEPRGACRSNRS-SFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYINKGT-SELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNAG 677
            MEP   CRS+RS S+EKWVAIVLT LAVVSPLYVN+K  +E E EEQSMD  SWL LL VLL+LAFAF LYLNQ FTR DRHWIR S  SSYERLVAIGL+VLGV+SPLY N+ T SELEPDEQPINFASWLPLLLLIL LAIA  L+CDR  T+FDPNWIHRVGGSSAGILL+LL+LA VLKCK +G
Sbjct:    1 MEPIAMCRSSRSCSYEKWVAIVLTILAVVSPLYVNRKSVSEAEFEEQSMDLASWLRLLLVLLILAFAFLLYLNQRFTRSDRHWIRSSSSSSYERLVAIGLVVLGVVSPLYTNRATVSELEPDEQPINFASWLPLLLLILILAIALSLYCDRSFTRFDPNWIHRVGGSSAGILLILLVLAFVLKCKASG 188

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: B9RQX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707450 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.795e-13
Identity = 94/176 (53.41%), Postives = 126/176 (71.59%), Query Frame = 3

Query:  147 SNRSSFEKWVAIVLTFLAVVSPLYVNQKPT-ELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYINKG-TSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCK 668
            S  SS+EK V + L  LAVVSPLY+N+ P  + E++EQ ++   WL LL ++L+ A A  LY ++ FTR         R SSYE+ V +GL +L V+SPLYIN+   S+LE +EQPI+ +SWLPLLLL+L LAIA  L+ D+  T+FDP WIHRVGGSS GI+++L+ILA+VLKCK
Sbjct:   10 SRSSSYEKLVFVCLGLLAVVSPLYINRAPVIDPEVDEQPINLAPWLPLLPLVLIFAIALSLYTDRGFTR-------SRRISSYEKFVGLGLGLLAVVSPLYINRRPNSDLELEEQPIDLSSWLPLLLLLLILAIALSLYLDQSLTRFDPYWIHRVGGSSGGIIVILVILALVLKCK 178

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A067KG81_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07599 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.513e-11
Identity = 82/163 (50.31%), Postives = 111/163 (68.10%), Query Frame = 3

Query:  123 MEPRGACRSNRSS-FEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHR 602
            MEP   CRS RSS +E+ V + L  LAV+SPLY+N++P ++ E +E+S+  TSWL LL +LL+LA     Y+++ FT       R S++SS+ERLV IGL +L V+SPLYIN +  ++LE +EQPI  ASWLPLL L L + IA  L  D+   +FDP WIHR
Sbjct:    1 MEPIATCRSRRSSSYERLVLVGLGLLAVISPLYINRRPVSDPEDDEESISLTSWLPLLLLLLILAVVLSQYIDRGFT-------RTSKFSSFERLVGIGLALLAVISPLYINRRPETDLELEEQPIKVASWLPLLPLALIVIIALSLCLDQSLPRFDPYWIHR 156

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: G7I919_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g015490 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.292e-10
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 3

Query:  369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHR 602
            R S++SS+ER+ AI L+VL V SPLYI+ +  SELE DEQPI+   WLP+LL +L L I+   F D+  T+FD NWIHR
Sbjct:    8 RGSKFSSFERVAAISLVVLAVASPLYIDHRSESELEDDEQPISVTLWLPMLLFVLVLVISLSAFLDKSFTRFDRNWIHR 86

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: G7I917_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g015470 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.135e-10
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 3

Query:  369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674
            R  ++SSYER+ AI L+VL V SPLYI+ +  SELE DEQPI+   WLP+LL +L L I+   F D+  T+FD NWIHRVGGSS GI+ +L++L +VLKCK +
Sbjct:    8 RGHKFSSYERVAAISLVVLAVASPLYIDHRSESELEDDEQPISVTLWLPMLLFVLVLVISLSAFLDKSFTRFDRNWIHRVGGSSGGIVFILILLFLVLKCKAS 110

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: I1MX79_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.866e-10
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 3

Query:  369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674
            R SR+SSYER+ AI L+VL V SPLYI+ +  SELE +EQ ++FA WLPLLL +L +AIA   F DR  T+FD +WIHRVGGSS GI+L+L++L +VLKCK +
Sbjct:    8 RKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKAS 110

HSP 2 Score: 58.9214 bits (141), Expect = 1.496e-7
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 3

Query:  123 MEPRGACRSNR-SSFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWI 368
            ME   + R +R SS+E+  AI L  LAV SPLY++ +P +ELE EEQS+ F  WL LL  +L++A A   +L+++FTRFDRHWI
Sbjct:    1 MELGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWI 84

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: A0A0B2RVF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009088 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.866e-10
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 3

Query:  369 RPSRYSSYERXXXXXXXXXXXXSPLYIN-KGTSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674
            R SR+SSYER+ AI L+VL V SPLYI+ +  SELE +EQ ++FA WLPLLL +L +AIA   F DR  T+FD +WIHRVGGSS GI+L+L++L +VLKCK +
Sbjct:    8 RKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWIHRVGGSSGGIVLILVVLFLVLKCKAS 110

HSP 2 Score: 58.9214 bits (141), Expect = 1.496e-7
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 3

Query:  123 MEPRGACRSNR-SSFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWI 368
            ME   + R +R SS+E+  AI L  LAV SPLY++ +P +ELE EEQS+ F  WL LL  +L++A A   +L+++FTRFDRHWI
Sbjct:    1 MELGDSSRKSRFSSYERVAAISLVVLAVASPLYIDHRPESELEDEEQSLSFAFWLPLLLFVLIIAIALSAFLDRNFTRFDRHWI 84

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: B9HD04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23710g PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.977e-9
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 3

Query:  123 MEPRGACRSNR-SSFEKWVAIVLTFLAVVSPLYVNQKP-TELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWIRPSRYSS 389
            MEP  ACR++R SS EK VAI L  LAVVSPL+++++P +E EL+E+S+   SW+ LL ++L+LA A  LYL++SFTRFD +WI  +  SS
Sbjct:    1 MEPIAACRTSRVSSCEKLVAIGLGLLAVVSPLFIDRRPVSESELDEESIILASWVPLLLLVLILATALSLYLDRSFTRFDPYWIHRAGGSS 91

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: F6H2S6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01940 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.955e-9
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 3

Query:  369 RPSRYSSYERXXXXXXXXXXXXSPLYINKG-TSELEPDEQPINFASWLPXXXXXXXXXXXXXXFCDRGCTKFDPNWIHRXXXXXXXXXXXXXXXXXXXKCKNA 674
            R +R+SSYERL AIGL +L V+SPLYI++    + E D QPI+  SWLPLLL++L  AI    + DR  ++FDP WIHRVGGSS GI+++L++LA+VLKCK +
Sbjct:    8 RSARFSSYERLGAIGLALLAVVSPLYIDRRPVLDPELDVQPISLVSWLPLLLMVLIFAITLSQYLDRRFSRFDPYWIHRVGGSSVGIIVILMVLALVLKCKAS 110

The following BLAST results are available for this feature:

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy Swiss-Prot

BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 11


Match Name	E-value	Identity	Description
A0A0D2TDB0_GOSRA	6.265e-72	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GJH6_THECC	3.206e-42	77.66	Uncharacterized protein OS=Theobroma cacao GN=TCM_...	[more]
B9RQX2_RICCO	3.795e-13	53.41	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0A067KG81_JATCU	1.513e-11	50.31	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
G7I919_MEDTR	1.292e-10	55.70	Transmembrane protein, putative OS=Medicago trunca...	[more]
G7I917_MEDTR	5.135e-10	56.31	Transmembrane protein, putative OS=Medicago trunca...	[more]
I1MX79_SOYBN	6.866e-10	60.19	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2RVF8_GLYSO	6.866e-10	60.19	Uncharacterized protein OS=Glycine soja GN=glysoja...	[more]
B9HD04_POPTR	5.977e-9	53.85	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
F6H2S6_VITVI	7.955e-9	56.31	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 82..186
None	No IPR available	PANTHER	PTHR35758:SF2	SUBFAMILY NOT NAMED	coord: 82..186
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 161..183
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 75..93
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 184..189
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 129..149
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 150..160
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 38..52
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 53..74
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 114..128
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..37
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 94..113
None	No IPR available	TMHMM	TMhelix		coord: 128..150
None	No IPR available	TMHMM	TMhelix		coord: 53..75
None	No IPR available	TMHMM	TMhelix		coord: 21..38
None	No IPR available	TMHMM	TMhelix		coord: 161..183
None	No IPR available	TMHMM	TMhelix		coord: 96..113

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.raimondii_cottongen_reftransV1_0001141 ID=g.raimondii_cottongen_reftransV1_0001141; Name=g.raimondii_cottongen_reftransV1_0001141; organism=Gossypium raimondii; type=contig; length=994bp
GGGAAAGTTCACACCTTTCTTTAAAAAAGAAAAAAAGAGGCAAATATAGG
ATTATATTACGAACTGGGAAATTCTCAATAAGAAAAAAAAAGGGTTGCTC
CTAAAGAAATTTGTTTTCATCAATGGAGCCTAGAGGTGCTTGCAGATCAA
ACAGGTCTTCATTTGAGAAATGGGTGGCAATTGTATTGACCTTTCTAGCT
GTGGTTTCACCTCTCTACGTCAACCAAAAGCCAACAGAGCTGGAGCTTGA
AGAGCAATCCATGGACTTCACCTCATGGTTATGTCTCCTGTTTGTGCTAC
TGCTCTTGGCCTTTGCTTTCTGGCTTTACTTGAACCAGAGCTTTACCAGG
TTCGACCGTCATTGGATTAGGCCGAGCAGGTATTCATCATATGAAAGACT
GGTTGCAATAGGCTTGATAGTCTTAGGTGTTCTTTCTCCTCTTTATATCA
ACAAGGGCACGAGTGAGCTCGAACCTGATGAGCAGCCCATCAACTTTGCT
TCTTGGTTGCCTCTTCTGCTATTGATATTAACCTTGGCCATCGCTACATT
GCTTTTCTGTGATAGAGGCTGTACGAAGTTCGATCCTAACTGGATTCATA
GAGTTGGGGGTTCTTCTGCTGGGATCTTACTGGTTCTTTTGATTCTTGCT
GTCGTTTTGAAGTGTAAGAATGCCGGTTGAAGTTGAATTTCTAACAACAG
GAAGTGATTCATTAAAGAACACAAGTCATGAAGCTTCTGTTTCTGTCAAT
GTCTTGGAGACGAAGGTTCTCTGTTTCATAGTTGCAGCCTTGCAGGTATT
AGACCATGTCATTGTAAGAAGAACGAATGTACAGTTTACTGTTAAACTGG
TGTTTTATCCAGTTGTGTACGGTTTCCATAATCCCTGTAACAGGGCTTTA
CCACAAAGCCAAGCTCTATACTTGACTATATTGGACGCATGGTGTGAATG
TAGTTCAAGTGTTCAACAATGTCACCTGCTCACGTATGCATAAA

Search form

g.raimondii_cottongen_reftransV1_0001141, g.raimondii_cottongen_reftransV1_0001141 (contig) Gossypium raimondii

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