g.raimondii_cottongen_reftransV1_0001033, g.raimondii_cottongen_reftransV1_0001033 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001033
Unique Nameg.raimondii_cottongen_reftransV1_0001033
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr04chromosomeg.raimondii_cottongen_reftransV1_0001033:1..1152 .
Chr04:4871543..4875222 -
Homology
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0D2QSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G053100 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.258e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH
Sbjct: 1456 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 1554
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0B0MKI8_GOSAR (MORC family CW-type zinc finger protein 4 OS=Gossypium arboreum GN=F383_20532 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.894e-47
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAFSK VSPPQ AANHVISARNRP FVRFLNFAQDVNYAMEASRKSRI FAHSKS LSGDEKGEVIYSVKKALDFNFQDIEG+LRL+RLAMEAVIH
Sbjct: 1455 ADKVAFSKSVSPPQAAANHVISARNRPNFVRFLNFAQDVNYAMEASRKSRIAFAHSKSILSGDEKGEVIYSVKKALDFNFQDIEGLLRLIRLAMEAVIH 1553
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A061DSA3_THECC (CW-type Zinc Finger, putative isoform 1 OS=Theobroma cacao GN=TCM_004564 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.119e-39
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAF KGV+ PQVA NHVISARNRP FVR LNFAQDVNYAMEASRKSRI FA +  SL G E GEVI  VKKALDFNFQD+EG+LRLVRLAMEA+ H
Sbjct: 1582 ADKVAFPKGVTSPQVAGNHVISARNRPYFVRLLNFAQDVNYAMEASRKSRIAFAAANLSLGGAESGEVISFVKKALDFNFQDVEGLLRLVRLAMEAISH 1680
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0B0NGY9_GOSAR (MORC family CW-type zinc finger protein 4 OS=Gossypium arboreum GN=F383_13515 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.988e-37
Identity = 75/99 (75.76%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAF KG+S PQVA NHVISARNRP FVR LNFAQDVN+AMEASRKSR TFA +  S  G E GE I SVKKALD+NFQD+EG+LRLVR+AMEA+ H
Sbjct: 1539 ADKVAFPKGLSSPQVAGNHVISARNRPNFVRLLNFAQDVNHAMEASRKSRSTFAAANFSSGGAESGEAITSVKKALDYNFQDVEGVLRLVRVAMEALNH 1637
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0D2SJ69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G130300 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.665e-34
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            A KVAF KGVS PQVA NHVISARNRP FVR LNFAQDVN+AMEASRKSR TFA +  S  G E GE I  VKKALD+NFQ++EG+LRLVR+AMEA+ H
Sbjct: 1565 AGKVAFPKGVSSPQVAGNHVISARNRPNFVRLLNFAQDVNHAMEASRKSRSTFAAANFSSGGAESGEAITFVKKALDYNFQEVEGVLRLVRVAMEALNH 1663
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0D2QUD0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G086900 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.449e-33
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAF KGV+ PQV  NHVISARNRP FVR LNFAQD+N+AMEASRKSR TF  + S+  G E G+ I SVKKALDFNF D+EG+L LVR+AMEA+ H
Sbjct: 1579 ADKVAFPKGVNSPQVVGNHVISARNRPNFVRLLNFAQDINHAMEASRKSRTTFLAASSNSKGAECGKSISSVKKALDFNFLDVEGVLHLVRVAMEAISH 1677
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0B0ML25_GOSAR (MORC family CW-type zinc finger protein 4 OS=Gossypium arboreum GN=F383_20536 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.525e-33
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAF KGV+ PQV  NHVISARNRP FVR LNFAQD+N+AMEASRKSR TF  + S+  G E G+ I SVKKALDFNF D+EG+L LVR+AMEA+ H
Sbjct: 1545 ADKVAFPKGVNSPQVVGNHVISARNRPNFVRLLNFAQDINHAMEASRKSRTTFLAASSNSKGAECGKSISSVKKALDFNFLDVEGVLHLVRVAMEAISH 1643
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0B0MDC4_GOSAR (MORC family CW-type zinc finger protein 4 OS=Gossypium arboreum GN=F383_20536 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.649e-33
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAVIH 297
            ADKVAF KGV+ PQV  NHVISARNRP FVR LNFAQD+N+AMEASRKSR TF  + S+  G E G+ I SVKKALDFNF D+EG+L LVR+AMEA+ H
Sbjct: 1556 ADKVAFPKGVNSPQVVGNHVISARNRPNFVRLLNFAQDINHAMEASRKSRTTFLAASSNSKGAECGKSISSVKKALDFNFLDVEGVLHLVRVAMEAISH 1654
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: W9QU77_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009057 PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.528e-32
Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    4 DKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291
            DKVA SKGVS PQVA NHVI+ARNRP FVR L+FAQDVN+AMEASRKSRI FA +  +++  + GE I S+K+ALDFNFQD++G+LRLVRLAME +
Sbjct: 1608 DKVALSKGVSSPQVATNHVIAARNRPNFVRLLSFAQDVNFAMEASRKSRIAFAAANVNMAEAKYGESISSIKRALDFNFQDVDGLLRLVRLAMEVI 1703
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A067H667_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000296mg PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.551e-31
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    4 DKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291
            DKVA  KGVS PQV  NHVI+ARNRP F R LNFAQDVN+AMEASRKSR  FA +  SL   +  E I S+K+ALDFNFQD+EG+LRLVRLAMEA+
Sbjct: 1613 DKVALPKGVSSPQVTGNHVIAARNRPNFSRLLNFAQDVNFAMEASRKSRSAFAAASVSLEEGQHKEGISSIKRALDFNFQDVEGLLRLVRLAMEAI 1708
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QSC4_GOSRA1.258e-51100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0MKI8_GOSAR3.894e-4792.93MORC family CW-type zinc finger protein 4 OS=Gossy... [more]
A0A061DSA3_THECC1.119e-3979.80CW-type Zinc Finger, putative isoform 1 OS=Theobro... [more]
A0A0B0NGY9_GOSAR5.988e-3775.76MORC family CW-type zinc finger protein 4 OS=Gossy... [more]
A0A0D2SJ69_GOSRA1.665e-3473.74Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QUD0_GOSRA1.449e-3370.71Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0ML25_GOSAR1.525e-3370.71MORC family CW-type zinc finger protein 4 OS=Gossy... [more]
A0A0B0MDC4_GOSAR1.649e-3370.71MORC family CW-type zinc finger protein 4 OS=Gossy... [more]
W9QU77_9ROSA2.528e-3269.79Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A067H667_CITSI1.551e-3169.79Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001033 ID=g.raimondii_cottongen_reftransV1_0001033; Name=g.raimondii_cottongen_reftransV1_0001033; organism=Gossypium raimondii; type=contig; length=1152bp
GCAGACAAGGTTGCTTTTTCAAAAGGTGTTAGCCCTCCCCAGGTTGCTGC
AAATCATGTTATTTCTGCTCGAAACCGTCCTATCTTTGTGCGGTTCCTCA
ATTTTGCACAGGATGTAAATTATGCCATGGAAGCTTCGAGGAAATCACGA
ATTACTTTTGCACATTCTAAATCAAGTTTGTCAGGGGATGAAAAGGGTGA
GGTTATATATTCTGTGAAAAAGGCTCTTGATTTTAACTTCCAAGACATAG
AGGGGATGCTACGTTTGGTACGCCTTGCAATGGAAGCCGTTATCCACTAA
GAAAGAGAAAGTGGTTAATGAGCATGATTTATACTAGGAAGGAATTTTCC
TTTTTATGGTTTATCCTTGGTGACGAAGTCCTTGAGGAGAAAAGAAATGG
AATGGTCAGTTTCTGCTGCAATGCATAACAATTATATTTAGAAGCTGACC
AGTGCCTGCTTTCTAACACCCCTTTTACACGTAAACCACCATAGTACCTG
TCATGGTATGCACATATGATTAATCAAGATGAGTTGAAACAATATATGAA
AAAGATTGGTGCCAAATTCTATGGTAGAGGTCCAAATGAGTTTACCGGAA
TAAAATTTCTTTTTCTTTTTTCCCTCTAGAGTCAGATATTTATGTACCGT
AAACATGTCTTTCTAATGGTTCTAAAATTCAGAATGTGGCAAGTGCTGTT
GTTTGTGGGAGACATCATTCTATTATCTTCAAGTTGGCCATCTTGATGCT
GATAGGTTGAATAATATGGGCAGTTGCATTCATCGGGAAGCTGCCTATGG
ATCGATGGCTATGGTGCTCTGATTTTTCATTTTTATTAGAGTATCCATGT
CTGGCACGACACCTTTTATGTGATGCAACTTCAAATGAGCATGGAGATAT
GATCTTCCAAATAAAACCCAACGTACTGGTGTTGGCGTCCATGTTTTCCA
ACTTTTTCACCTAAAAATATATCGGTTGCTAGGCTCCATGTGACATTTAG
AGGACAAATTTTGGACTGACGTTTTTTAAAAAAATCTCATTACTAGGCAA
TGACTCTTATTTTAATCAAGTTTTTCTACAAAATTGGACCCAAATCTGAT
TGCTGTTATATATCATGTCCTTGTTCAATTGTGTTTTCCTCTTTTTTTAT
CT
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