g.raimondii_cottongen_reftransV1_0000856, g.raimondii_cottongen_reftransV1_0000856 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000856
Unique Nameg.raimondii_cottongen_reftransV1_0000856
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.raimondii_cottongen_reftransV1_0000856:1..565 .
Chr12:3150197..3150761 +
Homology
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000856 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.raimondii_cottongen_reftransV1_0000856 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..94
NoneNo IPR availableTMHMMTMhelixcoord: 27..49

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000856 ID=g.raimondii_cottongen_reftransV1_0000856; Name=g.raimondii_cottongen_reftransV1_0000856; organism=Gossypium raimondii; type=contig; length=565bp
GTTCATGGACACTTCAGAGAGAACTTCCGGTAATCATATTTTGTTCGCTG
GACTGTGTTTTATTTGTCTTTAATTTGTTCGATGCTGAAAAATATATTCA
GTATCTTACATTTTCCCTGTTACAACTTATTGCTTTCTTGCCCTGTTTTC
TTTTAATGTTTCTCTTATCCATGTTCATTCTGAGTATCCTATTGGGACGA
AAATTTTGCCTAGTGACCACTCATGGTTTTAAGATTAAGATCCCTGTGCA
TTTATGTTTCAGTTATGCTAAGTCTCCCAATTTGCATGCATTTGTCTTCA
GGACCAGAACTTCTATCCTAGTTCTTATTTAAGCTATTTAAATGCTTCAT
TCATTCATGCGTCTAACTTTCATAGAAAATATCATAGAATTCTTACTTTC
ACTTTAGTGTTAGGAACGAAACAATTGGTACAGGTCTAAATTATTGGTAT
AGTTTTTCTGAGCAATAATATATGTAGACTACATTACAAGATAATGGTTC
GTTTTTTTGTTTCTTTCACAGGAAGGACGCTATGAGTACAAATATATAGT
TGATGGTGAATGGAC
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