g.raimondii_cottongen_reftransV1_0000682, g.raimondii_cottongen_reftransV1_0000682 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000682
Unique Nameg.raimondii_cottongen_reftransV1_0000682
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1962
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr09chromosomeg.raimondii_cottongen_reftransV1_0000682:1..1962 .
Chr09:16458210..16460267 +
Homology
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2URG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 8.002e-83
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = -2 
Query: 1113 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK 1514
            +  SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK
Sbjct:   20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK 153
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2S5I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.210e-78
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = -2 
Query: 1134 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1514
            +  SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR
Sbjct:   20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 146
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2QKC5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.014e-77
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = -2 
Query: 1134 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1505
            SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR
Sbjct:    2 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 125
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2URF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.091e-77
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = -2 
Query: 1134 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1514
            +  SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR
Sbjct:   20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 146
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2TTA2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.866e-77
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = -2 
Query: 1134 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1505
            SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR
Sbjct:    2 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 125
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2TNR2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.422e-77
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = -2 
Query: 1134 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1514
            +  SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR
Sbjct:   20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 146

HSP 2 Score: 70.8626 bits (172), Expect = 1.686e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2 
Query:  768 ELWLEFLFAEVSDQNFVDEEKGEKASNENVAPRS 869
            ELWLEFLFAEVSDQNFVDEEKGEKASNENVAPRS
Sbjct:  147 ELWLEFLFAEVSDQNFVDEEKGEKASNENVAPRS 180
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0NRV6_GOSAR (Polycystic kidney disease protein 1-like 2 OS=Gossypium arboreum GN=F383_03761 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 4.299e-59
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = -2 
Query: 1134 MEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1436
            MEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSP IQQFRSGSKSCVLASSSLQGNASTR
Sbjct:    1 MEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPCIQQFRSGSKSCVLASSSLQGNASTR 101
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FIY3_THECC (Cold regulated gene 27, putative isoform 2 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.278e-53
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = -2 
Query: 1128 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1502
            S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL   KSSRQ HC   TSSGQFKVLRGG WKKINFERPGFQ NKT+GS  FV SPW+Q FRSGS S V AS S+QG+AS++ +
Sbjct:   39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSKER 166
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FAS9_THECC (Cold regulated gene 27, putative isoform 3 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.150e-53
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = -2 
Query: 1128 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1502
            S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL   KSSRQ HC   TSSGQFKVLRGG WKKINFERPGFQ NKT+GS  FV SPW+Q FRSGS S V AS S+QG+AS++ +
Sbjct:   39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSKAE 166
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FC20_THECC (Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.631e-53
Identity = 97/131 (74.05%), Postives = 108/131 (82.44%), Query Frame = -2 
Query: 1119 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQ 1502
            S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL   KSSRQ HC   TSSGQFKVLRGG WKKINFERPGFQ NKT+GS  FV SPW+Q FRSGS S V AS S+QG+AS++  + Q
Sbjct:   39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSKEVSDQ 169
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2URG6_GOSRA8.002e-8397.76Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S5I8_GOSRA6.210e-7897.64Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QKC5_GOSRA1.014e-77100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2URF9_GOSRA1.091e-7797.64Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TTA2_GOSRA1.866e-77100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TNR2_GOSRA2.422e-7797.64Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NRV6_GOSAR4.299e-5999.01Polycystic kidney disease protein 1-like 2 OS=Goss... [more]
A0A061FIY3_THECC1.278e-5375.00Cold regulated gene 27, putative isoform 2 OS=Theo... [more]
A0A061FAS9_THECC2.150e-5375.00Cold regulated gene 27, putative isoform 3 OS=Theo... [more]
A0A061FC20_THECC2.631e-5374.05Cold regulated gene 27, putative isoform 1 OS=Theo... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000682 ID=g.raimondii_cottongen_reftransV1_0000682; Name=g.raimondii_cottongen_reftransV1_0000682; organism=Gossypium raimondii; type=contig; length=1962bp
GGAAAAACAAATAAGACCATAATTTAACTATTAAAATAATATCATTTACA
ATTTAAAAGAACCATATATGAAAACTGCAAAATAGGACACAGCAAACTAT
CTGCAACGCATTGCTCTACTAAAAATTAGTACACTATGAAGATGATAACA
AAGTATCCATTCTGAGTTCAAAAACTGCTATGGCAATAGTATGCACATAT
AGAAGGACAGGGTAGACCAAAATATTCTCGGATCATACCATCACTGCCTG
TGCAAGTGTATAAATTTATATATCGCCAATGCTTCAAATTTGAACCCTAT
AACTCCTCTTTCTGGCACTAAATACTAATGTCGGCCGCACTTGTTTATAT
TTGCAAGGAAAAAAACTGCCCTCTATGAACTACTCCTATCTGTCTCTTTG
TTAGTGTCATTCCTTTATACGTACGCAAATGCAAGTAACACAAGCATTGA
GTATGAAGTCACAAAAGTTTTTAATATTTATAGAGTATCCTTGGGTTTGC
TCACTATATCAGGATGTAACTAAACAAAACAGCTGCTATTTTCCAAATGA
ATATTCACTGGTGGAAGCTCTTTATCTAGCTGCCGTGCCAATACATGTTA
AGCTAGGTACTTCTGCTAAAGCAGGCTTCACCTTAAGGATGAAACTAAAA
AACAGAAAAATGAAAAAGTATTCAGAAACTTAGGACTAAAGAGGTGATCA
TTAATCAATGGCAATGCTAACAATTTGATCTCATCATTACATGAAGCAAC
AGTTACCAAAGATTTCAGCTTCTTGGAGCTACATTCTCATTGCTAGCCTT
TTCACCTTTTTCCTCATCTACGAAGTTCTGATCAGACACCTCTGCAAACA
AAAACTCCAGCCAAAGTTCTGATAATCTTGAATAAAATGTTCATTTTGAT
ACATATATATAGAAATGGTGATTATAATAGAGATGAAAAATATTAGTGAA
AGCACTTCAATTGAAACGTTGACATATGGACCATTCAATTTTAAATCATC
ATGCACACACCGATATACCAGTGCGGACATCTGTTGTAGTACTGCCAAGT
GGAATAAAGTTATCTTCACAATCTCGGCCAACTATGGGTAATGAGATGCA
TGAAAGTGTTCATTTAAATTGTTTGTTTTTACCTCTGGTTGAAGCATTGC
CTTGAAGACTAGAGGAGGCTAAGACACATGACTTAGATCCAGATCTGAAC
TGCTGGATCCAAGGGCTTCCCACAAAAGAACGAGAGCCATTAGTTTTATT
AGGTTGAAATCCAGGTCTTTCGAAATTGATCTTCTTCCAGCAACCACCTC
GAAGAACTTTAAACTGGCCAGAAGAGGTACAGTGTATTTGCCTTGATGAT
TTTGGTCTTTCCAATTTCTCCTTTTGTGAGTTCCAGCCAACAAGATTCAC
AGAATCATATAACTGGTTAATAAATGACGCTTCCATGGAATTAAGGTATA
AACTGTGCTTTTCATCCGTCCATTCAGTAGAGGTAGACTCTGCCACCACA
GAACTCTGTTGTATTATCATCAACACACATCATCAGCAAGTTATTGCAAA
AGGGAAGAAATTAAAACAGTACGTAATTCTTGCCGGCAACCAGATTAGAA
AACAACAATCCAAAATTAAAGTAAATAAATACCAAATGCTCAAAAGAAGA
GCGGTTGTAAATGAAAAATTAAAAGAAGATGCATGCTTGAAAATAAACAA
ATAAAAAATTAGCCTATAAAAGTGTTTTGTTAGTATATTAGGTGGTTTTA
AAGTGAAGCAAGGAAATTGAGCTGCAAAACCATATGAAAATTACACTAGT
CAACTGAGAGGGAGACGCCTCTAGACTCCTCCGAGGCTCAATTCTGTTGA
TACCCTCCATGCAAAAAAACACCTTAAGAAAAGATCCCCAGAGCGATGAA
GACAAATATATTTGAAGGGAGGGGTAGAGATGATGGCAGGTGAGATGTAC
TGAAAAGGTGAT
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