g.raimondii_cottongen_reftransV1_0000491, g.raimondii_cottongen_reftransV1_0000491 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A0D2NRA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G125000 PE=3 SV=1) HSP 1 Score: 344.354 bits (882), Expect = 1.859e-116 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = -3 Query: 144 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAPRKH 641 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAPRKH Sbjct: 93 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAPRKH 258
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A075QN71_GOSHI (HSF16 OS=Gossypium hirsutum GN=HSF16 PE=2 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 2.444e-111 Identity = 161/166 (96.99%), Postives = 162/166 (97.59%), Query Frame = -3 Query: 144 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAPRKH 641 NENFRKGAKHLLSEIHRRKTHRNHHDQQ PQQLFLKPEDS+GWMESPSPSPRGSST ILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQN VKPVPYQQKANTVGSNIIQLGPS HVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAPRKH Sbjct: 93 NENFRKGAKHLLSEIHRRKTHRNHHDQQHPQQLFLKPEDSYGWMESPSPSPRGSSTHILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNRVKPVPYQQKANTVGSNIIQLGPSSHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAPRKH 258
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A0B0N136_GOSAR (Heat stress transcription factor B-4-like protein OS=Gossypium arboreum GN=F383_31202 PE=3 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 2.693e-108 Identity = 157/161 (97.52%), Postives = 159/161 (98.76%), Query Frame = -3 Query: 159 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERF 641 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDS+GWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPS HVSGTETAETSVLGNSSSLTVPNNSNV+LFGVPLIDNER Sbjct: 93 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSYGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSSHVSGTETAETSVLGNSSSLTVPNNSNVQLFGVPLIDNERL 253
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A061GTY1_THECC (Heat shock transcription factor B4 OS=Theobroma cacao GN=TCM_040889 PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 5.048e-67 Identity = 120/173 (69.36%), Postives = 134/173 (77.46%), Query Frame = -3 Query: 147 NENFRKGAKHLLSEIHRRKTHRNH---HDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPS----IHVSGTETAETSVLGNSS-SLTVPNNSNVKLFGVPLIDNERFAPRK 641 NE FRKGAKHLLSEIHRRKT +NH H +QQ Q FLKPE+ GW+ESPSPSP+ S+ D+LTALTQDNQRLRRKNYMLVSELTHMK LYNDIIYFIQNHVKPVPYQQKA +G+ I + GPS IH SG E A +SVLG SS +LT N+ VKLFGVPL +R P K Sbjct: 97 NEYFRKGAKHLLSEIHRRKTPQNHQQYHHEQQTQ--FLKPEEGFGWIESPSPSPKASA-DVLTALTQDNQRLRRKNYMLVSELTHMKNLYNDIIYFIQNHVKPVPYQQKAYNLGTKIREFGPSFQDPIH-SGNENATSSVLGKSSMTLTEEPNNTVKLFGVPLSGRKRLHPEK 265
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: B9GG64_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28040g PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.849e-52 Identity = 99/172 (57.56%), Postives = 120/172 (69.77%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKTHRNHHDQ--QQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIH----VSGTETAETSVLGNSSSLTVP---NNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLLSEIHRRKT ++HH +QP Q F +PED W++ P SP+ SSTDILTAL++DNQRLRRKN ML+SEL+HMK LYNDIIYFIQNHVKP+PY+QKA +I+LG S S + A+ + SLT+ + S VKLFGVPL N+R P Sbjct: 97 NEYFRKGAKHLLSEIHRRKTSQHHHQHYPEQPPQFF-QPEDGFSWIDPPFQSPK-SSTDILTALSEDNQRLRRKNCMLLSELSHMKNLYNDIIYFIQNHVKPMPYEQKAYNAAPKLIELGSSCQDQTICSSIQRAKNGTVLGQHSLTLSTEESTSPVKLFGVPLSGNKRLHP 266
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: B9HNI5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07220g PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.769e-50 Identity = 98/172 (56.98%), Postives = 116/172 (67.44%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQL--FLKPED-SHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIH----VSGTETAETSVLGNSSSL--TVPNNSNVKLFGVPLIDNERFAP 641 NE FRKGAK LLSEIHRRKT HH Q P Q FL+ ED GW++ P PSP+ + ILTAL++DNQ+LRRKN ML+SEL+HMK LYNDIIYFIQNHVKPVP +QKA +I+ G S G + A+ VLG S T ++S VKLFGVPLIDN+R P Sbjct: 97 NEYFRKGAKQLLSEIHRRKTISQHHHQHYPDQATQFLQSEDHGFGWIDPPFPSPKPNVDHILTALSEDNQKLRRKNCMLLSELSHMKNLYNDIIYFIQNHVKPVPNEQKAYNTVPKLIEPGSSCQDQTICFGVQRAKNGVLGKHSLTFSTEESSSPVKLFGVPLIDNKRLHP 268
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: I1NDX7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 5.587e-47 Identity = 91/172 (52.91%), Postives = 123/172 (71.51%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKTHRNHHD---QQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVS----GTETAETSVLGNSSSLTV--PNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRK + HH Q P Q+F + E+ W+++P PSP+ +TDILTAL++DNQRLRRKN+ML+SEL+HMK+LYNDIIYFIQNHVKP P++Q++++V N+++L S+H S G + S + + S +T +NS+VKLFG PL +R P Sbjct: 98 NEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQSPSQIFQQDENL-CWLDTPLPSPK-PNTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPFEQRSSSVIPNLVELD-SLHESPNDMGVRRSAKSCVVDKSLITSTEESNSSVKLFGFPLSGRKRLHP 266
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A0B2R0A2_GLYSO (Heat stress transcription factor B-4 OS=Glycine soja GN=glysoja_030630 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 5.587e-47 Identity = 91/172 (52.91%), Postives = 123/172 (71.51%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKTHRNHHD---QQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVS----GTETAETSVLGNSSSLTV--PNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRK + HH Q P Q+F + E+ W+++P PSP+ +TDILTAL++DNQRLRRKN+ML+SEL+HMK+LYNDIIYFIQNHVKP P++Q++++V N+++L S+H S G + S + + S +T +NS+VKLFG PL +R P Sbjct: 98 NEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQSPSQIFQQDENL-CWLDTPLPSPK-PNTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPFEQRSSSVIPNLVELD-SLHESPNDMGVRRSAKSCVVDKSLITSTEESNSSVKLFGFPLSGRKRLHP 266
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: C6TH66_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.331e-46 Identity = 90/172 (52.33%), Postives = 122/172 (70.93%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKTHRNHHD---QQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVS----GTETAETSVLGNSSSLTV--PNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRK + HH Q P Q+F + E+ W+++P PSP+ +TDILTAL++DNQRLRRKN+ML+SEL+HMK+LYNDIIYFIQNHVKP P++Q++++V N+++L +H S G + S + + S +T +NS+VKLFG PL +R P Sbjct: 98 NEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQSPSQIFQQDENL-CWLDTPLPSPK-PNTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPFEQRSSSVIPNLVELD-LLHESPNDMGVRRSAKSCVVDKSLITSTEESNSSVKLFGFPLSGRKRLHP 266
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: K7L3H6_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.260e-42 Identity = 89/173 (51.45%), Postives = 123/173 (71.10%), Query Frame = -3 Query: 150 NENFRKGAKHLLSEIHRRKTHRNHHD---QQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTE-----TAETSVLGNS-SSLTVPNNSNVKLFGVPLIDNERFAPR 641 NE FRKGAKHLL EIHRRK + HH Q P Q+ L+ ++S W+++P PS + +TDILTAL++DNQ LRRKN+ML+SEL+HMK+LYNDIIYFIQNHVK P++Q++++V +++L S+H S + TA++ V+ S + T +NS+VKLFGV L + APR Sbjct: 98 NEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQLPSQI-LQKDESLCWLDTPLPSSK-PNTDILTALSEDNQTLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKSPPFEQRSSSVIPKLVELD-SLHESPNDMGVLRTAKSCVVDKSLVTSTEESNSSVKLFGVTL-SGRKIAPR 266
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.260e-26 Identity = 73/182 (40.11%), Postives = 95/182 (52.20%), Query Frame = -3 Query: 168 NENFRKGAKHLLSEIHRRKTHRNHHD---------QQQPQQLFLKPEDS------------HGWMESPSPSPR---GSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDN 641 NE FRKGAKHLLSEIHRRK+ Q P LF P + + E SP G D+L AL++DN++LRR+N +L+SEL HM+ LYNDIIYF+QNHV+PV A +++LGPS T E S S +++ V+LFGV L D+ Sbjct: 109 NEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVEPVAPPPLAAATSCRLVELGPS-------TTERRRCAASPSGDNDDDAAVRLFGVRLDDD 283
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.207e-23 Identity = 79/220 (35.91%), Postives = 106/220 (48.18%), Query Frame = -3 Query: 135 NENFRKGAKHLLSEIHRRKTHR-----------NHHDQQQ-----------PQQLFLKPEDSHGWMESPSPS-PRGSSTDI-----LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLG----PSIHVSGTETAETSVLG--------NSSSLTV-----------PNNSNVKLFGVPLIDNERFAPRKH*YS 641 NE F++G KHLL EIHRRKT + +HH Q P PE+ H W + PS PR I +TAL++DN+RLRR N +L+SEL HMK LYNDIIYF+QNHVKPV ++ + S + + P++ T T + L + SS+TV N KLFGV L +++ R H +S Sbjct: 107 NEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFLQKQQQQQPPTLDYYNTATVNATNLNALNSSPPTSQSSITVLEDDHTNHHDQSNMRKTKLFGVSLPSSKK---RSHHFS 323
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-17 Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = -3 Query: 351 NENFRKGAKHLLSEIHRRKTHRNHHDQQQ-----------PQQLF----------LKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNH 641 NE FRKGAKHLL+EIHRRK+ + P L L E+ G D L AL++DN++LRR+N +L+SEL HMK LYNDIIYF+QNH Sbjct: 107 NEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNH 224
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.653e-12 Identity = 52/152 (34.21%), Postives = 65/152 (42.76%), Query Frame = -3 Query: 345 NENFRKGAKHLLSEIHRRKTHRN-------------------HHDQQQPQQ---LFLKPED---SHG---------WME-------------SPSPSPRGSSTDILT------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641 NE FRKG K LL+EIHRRKT HH Q F+ + +HG W E P+PSP + L ++N+RLRR N L+ EL HM+ LYNDIIYF+QNHV+ Sbjct: 98 NEFFRKGEKQLLTEIHRRKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPHWREPNLPVATRLLALGGPAPSPSSAEAGGAGRAATAAVLMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVR 249
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.033e-11 Identity = 50/145 (34.48%), Postives = 62/145 (42.76%), Query Frame = -3 Query: 345 NENFRKGAKHLLSEIHRRKT------------HRNHHDQQQPQQLFLKPEDS--HG-------------WMESPSPSPRGSSTDILT-------------------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641 NE FRKG K LL EIHRRK+ + F + D HG W ES + P S+ +L+ AL Q+N RL R N LV EL HM+ LY+DIIYF+QNHV+ Sbjct: 103 NEFFRKGEKQLLCEIHRRKSAAATWPPFPPPPPPFFAPRHFAAGAFFRHGDGMLHGRLGALVTTTERRHWFESAA-LPVAPSSRLLSQLGPVIAPARRAAATPEEEALMQENHRLLRGNAALVQELAHMRKLYSDIIYFVQNHVR 246
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 4.732e-7 Identity = 36/126 (28.57%), Postives = 51/126 (40.48%), Query Frame = -3 Query: 336 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDI------------------------LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVP 641 NENF++G K LL+ I RRKT + P S SP S DI T L+ +N++L++ N ML SEL K N+++ F+ +VK P Sbjct: 82 NENFKRGQKELLTAIRRRKTVTST------------PAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAP 195 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000491 ID=g.raimondii_cottongen_reftransV1_0000491; Name=g.raimondii_cottongen_reftransV1_0000491; organism=Gossypium raimondii; type=contig; length=643bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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