g.raimondii_cottongen_reftransV1_0000429, g.raimondii_cottongen_reftransV1_0000429 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A0D2U8C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N002800 PE=4 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.934e-46 Identity = 110/146 (75.34%), Postives = 110/146 (75.34%), Query Frame = -3 Query: 2 MMNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSVKTTNCTTSPPPALIKVTINEKKTAKGGLDMQTDELRELVPGGEAMDVCNLLDETA 439 MMNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWSRAMLSRFRSRRSAFSGRRSSVKTTNC GEAMDVCNLLDETA Sbjct: 1 MMNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWSRAMLSRFRSRRSAFSGRRSSVKTTNC------------------------------------GEAMDVCNLLDETA 110
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A061DM44_THECC (Transcription factor, putative OS=Theobroma cacao GN=TCM_002668 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.223e-38 Identity = 88/142 (61.97%), Postives = 102/142 (71.83%), Query Frame = -3 Query: 2 NPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSVKTTNCTTSPPPALIKVTINEK--KTAKG---GLDMQTDELRELVPGGEAMDVCNLLDETA 412 NPS SLKSRF TRFL ALT INA++PISS SP I QRYRRIKVA++KSMAYSVRSRR WSRAM + RSR + +K TT+ A++K T +E+ KT G G +QTD LRELVPGGEAMD+CNLLDETA Sbjct: 7 NPS-SLKSRFTTRFLRALTNINAQNPISSSSPREILQRYRRIKVAADKSMAYSVRSRRTWSRAMRWKLRSRSWRQASSVRRLKI---TTTCHQAIMKKTAHERESKTTTGEEVGFGVQTDGLRELVPGGEAMDICNLLDETA 144
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A0D2QUF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G228500 PE=4 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.559e-34 Identity = 85/149 (57.05%), Postives = 101/149 (67.79%), Query Frame = -3 Query: 2 MNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSVKTTNCTTSPPPALIKVTINEKKTAKG----GLDMQTDELRELVPGGEAMDVCNLLDETA 436 MN P + NP TSLKSRF TRFL ALTKI A+ PISS SPT IF+RYRRIK A++KSMAYSVRSRRIWSRAML + RSR S ++ A++K + NE T + G + DELR+LVPGGE M++CNLLDETA Sbjct: 1 MNNPHHL-NP-TSLKSRFTTRFLRALTKIRAQKPISSSSPTEIFRRYRRIKAAADKSMAYSVRSRRIWSRAMLWKLRSRSYRRQDPCSGRRSGKTN----QAIMKKSSNENTTTRREDGVGFVEEADELRQLVPGGETMNLCNLLDETA 143
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A0D2TFY0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159800 PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.455e-33 Identity = 83/153 (54.25%), Postives = 102/153 (66.67%), Query Frame = -3 Query: 2 QVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXX-----------XSVKTTNCTTSPPPALIKVTINEKKTAKG--GLDMQTDELRELVPGGEAMDVCNLLDETA 421 Q NPS SLKSRF RFL AL KINA+ PISS SP IFQRYRRIKVA++KSMAYSVRSRR WSRA L + RS+ ++ T +T+ A+++ T +EK+ + GL +Q +ELRELVPGGE+MD+CNLLDETA Sbjct: 4 QHLNPS-SLKSRFTARFLRALIKINAQKPISSSSPREIFQRYRRIKVAADKSMAYSVRSRRTWSRATLWKLRSQSRRRLASSGRRSSIKTRTTTTTTITTTSTNHRAAIVEKTSHEKENKEDHVGLAVQAEELRELVPGGESMDLCNLLDETA 155
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: B9SMN9_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1626870 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.447e-15 Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = -3 Query: 2 MNTPQQVKNPSTSLKSRFITRFLGALTKINAE----DPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXX-XXXXXXXXXXXXXSVKTTNCTTSPP-PALIKVTINEKKTAKGGLDMQTDELRELVPGGEAMDVCNLLDETA 436 MN P Q SLKSRF FL +L KIN + + S SP F+R R+K A++KS+A++V RR WSRAML + R VK N + L K IN++ + G D Q +LR+LVPG E MD+C+LLDE A Sbjct: 1 MNHPHQCSLNPNSLKSRFTKGFLRSLLKINRQRVRNNIPSCSSPGEFFERCHRVKTAADKSLAFAVGRRRAWSRAMLFKIRNRARRRRRQHCVLVKRINHHQAKKIICLKKEQINDE---EAGFD-QASKLRKLVPGSEGMDLCSLLDEAA 147
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A067LKN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15110 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.655e-13 Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = -3 Query: 2 MNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSV------KTTNCTTSPPPALIKVTINEKKTAKGGLDMQTDELRELVPGGEAMDVCNLLDETA 436 MN QQ+ S+KSRF FL +L KIN + P I+QR R+K+A++KS+A++V SR+ WSRA+L + R+RR + R + + K +C +S +N+ G D+ +LR+LVPGGEAM++ LL+E A Sbjct: 1 MNPRQQLSLNPNSIKSRFTRVFLKSLCKINKQRSFVPYCPKEIYQRSNRVKIAADKSLAFAVGSRKAWSRALLFKIRNRRRQWRHRTNLLRRIKERKDKSCLSSD--------VND-----AGFDL-VRKLRKLVPGGEAMELSKLLEEAA 137 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 6
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000429 ID=g.raimondii_cottongen_reftransV1_0000429; Name=g.raimondii_cottongen_reftransV1_0000429; organism=Gossypium raimondii; type=contig; length=732bpback to top |