g.raimondii_cottongen_reftransV1_0000429, g.raimondii_cottongen_reftransV1_0000429 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000429
Unique Nameg.raimondii_cottongen_reftransV1_0000429
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length732
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigg.raimondii_cottongen_reftransV1_0000429:1..732 .
scaffold_14:867401..868110 +
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A0D2U8C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N002800 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.934e-46
Identity = 110/146 (75.34%), Postives = 110/146 (75.34%), Query Frame = -3
Query:    2 MMNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSVKTTNCTTSPPPALIKVTINEKKTAKGGLDMQTDELRELVPGGEAMDVCNLLDETA 439
            MMNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWSRAMLSRFRSRRSAFSGRRSSVKTTNC                                    GEAMDVCNLLDETA
Sbjct:    1 MMNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWSRAMLSRFRSRRSAFSGRRSSVKTTNC------------------------------------GEAMDVCNLLDETA 110          
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A061DM44_THECC (Transcription factor, putative OS=Theobroma cacao GN=TCM_002668 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.223e-38
Identity = 88/142 (61.97%), Postives = 102/142 (71.83%), Query Frame = -3
Query:    2 NPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSVKTTNCTTSPPPALIKVTINEK--KTAKG---GLDMQTDELRELVPGGEAMDVCNLLDETA 412
            NPS SLKSRF TRFL ALT INA++PISS SP  I QRYRRIKVA++KSMAYSVRSRR WSRAM  + RSR    +     +K    TT+   A++K T +E+  KT  G   G  +QTD LRELVPGGEAMD+CNLLDETA
Sbjct:    7 NPS-SLKSRFTTRFLRALTNINAQNPISSSSPREILQRYRRIKVAADKSMAYSVRSRRTWSRAMRWKLRSRSWRQASSVRRLKI---TTTCHQAIMKKTAHERESKTTTGEEVGFGVQTDGLRELVPGGEAMDICNLLDETA 144          
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A0D2QUF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G228500 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.559e-34
Identity = 85/149 (57.05%), Postives = 101/149 (67.79%), Query Frame = -3
Query:    2 MNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSVKTTNCTTSPPPALIKVTINEKKTAKG----GLDMQTDELRELVPGGEAMDVCNLLDETA 436
            MN P  + NP TSLKSRF TRFL ALTKI A+ PISS SPT IF+RYRRIK A++KSMAYSVRSRRIWSRAML + RSR        S  ++         A++K + NE  T +     G   + DELR+LVPGGE M++CNLLDETA
Sbjct:    1 MNNPHHL-NP-TSLKSRFTTRFLRALTKIRAQKPISSSSPTEIFRRYRRIKAAADKSMAYSVRSRRIWSRAMLWKLRSRSYRRQDPCSGRRSGKTN----QAIMKKSSNENTTTRREDGVGFVEEADELRQLVPGGETMNLCNLLDETA 143          
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A0D2TFY0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159800 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.455e-33
Identity = 83/153 (54.25%), Postives = 102/153 (66.67%), Query Frame = -3
Query:    2 QVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXX-----------XSVKTTNCTTSPPPALIKVTINEKKTAKG--GLDMQTDELRELVPGGEAMDVCNLLDETA 421
            Q  NPS SLKSRF  RFL AL KINA+ PISS SP  IFQRYRRIKVA++KSMAYSVRSRR WSRA L + RS+                   ++   T  +T+   A+++ T +EK+  +   GL +Q +ELRELVPGGE+MD+CNLLDETA
Sbjct:    4 QHLNPS-SLKSRFTARFLRALIKINAQKPISSSSPREIFQRYRRIKVAADKSMAYSVRSRRTWSRATLWKLRSQSRRRLASSGRRSSIKTRTTTTTTITTTSTNHRAAIVEKTSHEKENKEDHVGLAVQAEELRELVPGGESMDLCNLLDETA 155          
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: B9SMN9_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1626870 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.447e-15
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = -3
Query:    2 MNTPQQVKNPSTSLKSRFITRFLGALTKINAE----DPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXX-XXXXXXXXXXXXXSVKTTNCTTSPP-PALIKVTINEKKTAKGGLDMQTDELRELVPGGEAMDVCNLLDETA 436
            MN P Q      SLKSRF   FL +L KIN +    +  S  SP   F+R  R+K A++KS+A++V  RR WSRAML +     R         VK  N   +     L K  IN++   + G D Q  +LR+LVPG E MD+C+LLDE A
Sbjct:    1 MNHPHQCSLNPNSLKSRFTKGFLRSLLKINRQRVRNNIPSCSSPGEFFERCHRVKTAADKSLAFAVGRRRAWSRAMLFKIRNRARRRRRQHCVLVKRINHHQAKKIICLKKEQINDE---EAGFD-QASKLRKLVPGSEGMDLCSLLDEAA 147          
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Match: A0A067LKN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15110 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.655e-13
Identity = 57/151 (37.75%), Postives = 86/151 (56.95%), Query Frame = -3
Query:    2 MNTPQQVKNPSTSLKSRFITRFLGALTKINAEDPISSPSPTRIFQRYRRIKVASNKSMAYSVRSRRIWXXXXXXXXXXXXXXXXXXXXSV------KTTNCTTSPPPALIKVTINEKKTAKGGLDMQTDELRELVPGGEAMDVCNLLDETA 436
            MN  QQ+     S+KSRF   FL +L KIN +       P  I+QR  R+K+A++KS+A++V SR+ WSRA+L + R+RR  +  R + +      K  +C +S         +N+      G D+   +LR+LVPGGEAM++  LL+E A
Sbjct:    1 MNPRQQLSLNPNSIKSRFTRVFLKSLCKINKQRSFVPYCPKEIYQRSNRVKIAADKSLAFAVGSRKAWSRALLFKIRNRRRQWRHRTNLLRRIKERKDKSCLSSD--------VND-----AGFDL-VRKLRKLVPGGEAMELSKLLEEAA 137          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0D2U8C1_GOSRA1.934e-4675.34Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DM44_THECC2.223e-3861.97Transcription factor, putative OS=Theobroma cacao ... [more]
A0A0D2QUF2_GOSRA9.559e-3457.05Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TFY0_GOSRA1.455e-3354.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9SMN9_RICCO3.447e-1541.06Transcription factor, putative OS=Ricinus communis... [more]
A0A067LKN8_JATCU9.655e-1337.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
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BLAST of g.raimondii_cottongen_reftransV1_0000429 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000429 ID=g.raimondii_cottongen_reftransV1_0000429; Name=g.raimondii_cottongen_reftransV1_0000429; organism=Gossypium raimondii; type=contig; length=732bp
GTGCAGTCTCATCCAACAAGTTGCAGACATCCATGGCTTCACCACCTGGA
ACAAGCTCTCTTAACTCATCAGTTTGCATATCAAGTCCACCTTTAGCAGT
CTTTTTTTCATTAATAGTAACTTTGATCAAGGCAGGTGGAGGAGAAGTAG
TACAATTTGTGGTCTTGACTGATGATCTTCTGCCTGAAAAAGCCGATCGA
CGGCTTCGGAACCTCGAAAGCATTGCCCTACTCCAAATTCTCCTGGATCT
AACCGAGTAAGCCATAGACTTGTTAGATGCTACCTTAATTCTCCGATAAC
GTTGGAAGATCCTTGTGGGAGAAGGTGATGAGATGGGGTCTTCAGCATTT
ATCTTAGTCAAAGCCCCAAGGAACCTGGTGATGAACCTGGATTTTAGAGA
GGTACTAGGGTTCTTCACCTGTTGAGGGGTATTCATCATGGTGGATCGAT
GGATGGGATGAAAAAGTTGCTCAAGTACTGATAAGAGAAACCTAGTAAGC
AAAGCTAGGGTTTTGTTTCATTATGGATTTTTCGTTTAGGGTTTAGCTTC
TGACACAATATCTATATATAGACCGAACCAAACAACAAAAAAGACGAGAT
ATTGAGGTCAGGGAAAACAGATTTTTTTTTTCAACAACAAAAACATGAGA
GAAGATGGGAATGAAAGAAAAGAACAGAAAAAAGGGAGATAGGAAAGTAT
GGGAGGTGTAAAGAGGAAGGAGACTTGGGAAA
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