Identification and mapping of microsatellite markers linked to a root-knot nematode resistance gene (rkn1) in Acala NemX cotton (Gossypium hirsutum L.)

Publication Overview
TitleIdentification and mapping of microsatellite markers linked to a root-knot nematode resistance gene (rkn1) in Acala NemX cotton (Gossypium hirsutum L.)
AuthorsWang C, Ulloa M, Roberts P
TypeJournal Article
Journal NameTheoretical and applied genetics
Volume112
Issue4
Year2006
Page(s)770-777
CitationWang C, Ulloa M, Roberts P. Identification and mapping of microsatellite markers linked to a root-knot nematode resistance gene (rkn1) in Acala NemX cotton (Gossypium hirsutum L.). Theoretical and applied genetics. 2006; 112(4):770-777.
Publication CodeTAG-112-770

Abstract

Host-plant resistance is the most economic and effective strategy for root-knot nematode (RKN) Meloidogyne incognita control in cotton (Gossypium hirsutum L.). Molecular markers linked to resistance are important for incorporating resistance genes into elite cultivars. To screen for microsatellite markers (SSR) closely linked to RKN resistance in G. hirsutum cv. Acala NemX, F₁, F₂, BC₁F₁, and F₂:₇ recombinant inbred lines (RILs) from intraspecific crosses and an F₂ from an interspecific cross with G. barbadense cv. Pima S-7 were used. Screening of 284 SSR markers, which cover all the known identified chromosomes and most linkage groups of cotton, was performed by bulked segregant analysis, revealing informative SSRs. The informative SSRs were then mapped on the above populations. One co-dominant SSR marker CIR316 was identified tightly linked to a major resistance gene (designated as rkn1), producing amplified DNA fragments of approximately 221 bp (CIR316a) and 210 bp (CIR316c) in Acala NemX and susceptible Acala SJ-2, respectively. The linkage between CIR316a marker and resistance gene rkn1 in Acala NemX had an estimated distance of 2.1-3.3 cM depending on the population used. Additional markers, including BNL1231 with loose linkage to rkn1 (map distance 25.1-27.4 cM), BNL1066, and CIR003 allowed the rkn1 gene to be mapped to cotton linkage group A03. This is the first report in cotton with a closely linked major gene locus determining nematode resistance, and informative SSRs may be used for marker-assisted selection.
Features
This publication contains information about 1 features:
Feature NameUniquenameType
rootknot nematode resistancerootknot nematode resistance_rkn1heritable_phenotypic_marker
Featuremaps
This publication contains information about 1 maps:
Map Name
NemX x SJ-2, RIL (2005)
Properties
Additional details for this publication include:
Property NameValue
Language Abbreng
Publication Date2006
Publication Model[electronic resource].
Publication TypeJournal Article
Published Location|||
URLhttp://dx.doi.org/10.1007/s00122-005-0183-0
Publication CodeTAG-112-770
pISSN0040-5752
LanguageEnglish
Journal CodeTAG
Journal AliasTheoretical and Applied Genetics. Theoretische und angewandte Genetik
eISSN1432-2242
KeywordsGossypium hirsutum, cotton, cultivars, pest resistance, root-knot nematodes, Meloidogyne incognita, chromosome mapping, genetic markers, microsatellite repeats, loci, linkage groups, interspecific hybridization, Gossypium barbadense, rkn1 gene
Cross References
This publication is also available in the following databases:
DatabaseAccession
AGL: USDA National Agricultural LibraryAGL:3797639
PMID: PubMedPMID:16362274